Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_04094

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_04092 and H281DRAFT_04093 overlap by 4 nucleotidesH281DRAFT_04093 and H281DRAFT_04094 overlap by 4 nucleotidesH281DRAFT_04094 and H281DRAFT_04095 are separated by 246 nucleotidesH281DRAFT_04095 and H281DRAFT_04096 are separated by 133 nucleotides H281DRAFT_04092: H281DRAFT_04092 - peptide/nickel transport system permease protein, at 199,039 to 200,046 _04092 H281DRAFT_04093: H281DRAFT_04093 - peptide/nickel transport system permease protein, at 200,043 to 200,912 _04093 H281DRAFT_04094: H281DRAFT_04094 - peptide/nickel transport system ATP-binding protein, at 200,909 to 203,143 _04094 H281DRAFT_04095: H281DRAFT_04095 - hypothetical protein, at 203,390 to 203,872 _04095 H281DRAFT_04096: H281DRAFT_04096 - Aldo/keto reductase, at 204,006 to 204,851 _04096 Position (kb) 200 201 202 203 204Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 199.969 kb on + strandat 200.208 kb on + strand, within H281DRAFT_04093at 200.374 kb on + strand, within H281DRAFT_04093at 200.374 kb on + strand, within H281DRAFT_04093at 200.374 kb on + strand, within H281DRAFT_04093at 200.512 kb on + strand, within H281DRAFT_04093at 201.002 kb on + strandat 201.003 kb on - strandat 201.003 kb on - strandat 201.153 kb on + strand, within H281DRAFT_04094at 201.153 kb on + strand, within H281DRAFT_04094at 201.410 kb on + strand, within H281DRAFT_04094at 201.590 kb on - strand, within H281DRAFT_04094at 201.824 kb on + strand, within H281DRAFT_04094at 201.825 kb on - strand, within H281DRAFT_04094at 201.926 kb on + strand, within H281DRAFT_04094at 202.613 kb on + strand, within H281DRAFT_04094at 202.649 kb on + strand, within H281DRAFT_04094at 202.650 kb on - strand, within H281DRAFT_04094at 202.739 kb on + strand, within H281DRAFT_04094at 202.740 kb on - strand, within H281DRAFT_04094at 202.741 kb on + strand, within H281DRAFT_04094at 202.934 kb on + strandat 202.934 kb on + strandat 202.935 kb on - strandat 202.935 kb on - strandat 202.935 kb on - strandat 202.935 kb on - strandat 202.969 kb on + strandat 203.035 kb on - strandat 203.147 kb on + strandat 203.148 kb on - strandat 203.148 kb on - strandat 203.322 kb on - strandat 203.322 kb on - strandat 203.322 kb on - strandat 203.355 kb on - strandat 203.364 kb on + strandat 203.365 kb on - strandat 203.374 kb on - strandat 203.926 kb on + strandat 203.926 kb on + strandat 203.983 kb on + strandat 203.983 kb on + strandat 204.050 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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199,969 + +0.8
200,208 + H281DRAFT_04093 0.19 +0.4
200,374 + H281DRAFT_04093 0.38 +0.4
200,374 + H281DRAFT_04093 0.38 +1.8
200,374 + H281DRAFT_04093 0.38 +0.5
200,512 + H281DRAFT_04093 0.54 +0.4
201,002 + -0.7
201,003 - +0.2
201,003 - +0.2
201,153 + H281DRAFT_04094 0.11 +0.1
201,153 + H281DRAFT_04094 0.11 -0.4
201,410 + H281DRAFT_04094 0.22 -0.0
201,590 - H281DRAFT_04094 0.30 -1.6
201,824 + H281DRAFT_04094 0.41 -0.3
201,825 - H281DRAFT_04094 0.41 +0.5
201,926 + H281DRAFT_04094 0.46 -0.1
202,613 + H281DRAFT_04094 0.76 -0.1
202,649 + H281DRAFT_04094 0.78 +0.4
202,650 - H281DRAFT_04094 0.78 +0.5
202,739 + H281DRAFT_04094 0.82 +0.5
202,740 - H281DRAFT_04094 0.82 +1.3
202,741 + H281DRAFT_04094 0.82 -0.0
202,934 + -0.0
202,934 + -1.1
202,935 - +1.1
202,935 - +1.1
202,935 - +1.7
202,935 - -0.7
202,969 + +0.3
203,035 - -1.4
203,147 + +0.9
203,148 - -1.0
203,148 - -0.5
203,322 - +2.3
203,322 - +1.2
203,322 - -1.7
203,355 - -3.1
203,364 + -0.2
203,365 - +0.3
203,374 - +0.8
203,926 + +0.3
203,926 + +0.4
203,983 + +1.2
203,983 + -0.5
204,050 - -0.2

Or see this region's nucleotide sequence