Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03633 and H281DRAFT_03634 are separated by 439 nucleotides H281DRAFT_03634 and H281DRAFT_03635 are separated by 1 nucleotides H281DRAFT_03635 and H281DRAFT_03636 are separated by 49 nucleotides
H281DRAFT_03633: H281DRAFT_03633 - Outer membrane protein (porin), at 142,690 to 143,763
_03633
H281DRAFT_03634: H281DRAFT_03634 - 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit, at 144,203 to 144,517
_03634
H281DRAFT_03635: H281DRAFT_03635 - hypothetical protein, at 144,519 to 144,830
_03635
H281DRAFT_03636: H281DRAFT_03636 - Phenylpropionate dioxygenase, large terminal subunit, at 144,880 to 145,983
_03636
Position (kb)
144
145 Strain fitness (log2 ratio)
-2
-1
0
1 at 143.376 kb on - strand, within H281DRAFT_03633 at 143.523 kb on - strand, within H281DRAFT_03633 at 143.575 kb on + strand, within H281DRAFT_03633 at 143.576 kb on - strand, within H281DRAFT_03633 at 143.657 kb on + strand at 143.657 kb on + strand at 143.657 kb on + strand at 143.658 kb on - strand at 143.957 kb on - strand at 143.992 kb on - strand at 144.016 kb on + strand at 144.083 kb on + strand at 144.084 kb on - strand at 144.084 kb on - strand at 144.296 kb on + strand, within H281DRAFT_03634 at 144.296 kb on + strand, within H281DRAFT_03634 at 144.412 kb on - strand, within H281DRAFT_03634 at 144.470 kb on + strand, within H281DRAFT_03634 at 144.633 kb on - strand, within H281DRAFT_03635 at 144.829 kb on - strand at 144.928 kb on + strand at 144.952 kb on + strand at 144.953 kb on - strand at 144.953 kb on - strand at 144.958 kb on + strand at 145.336 kb on + strand, within H281DRAFT_03636 at 145.381 kb on + strand, within H281DRAFT_03636
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 143,376 - H281DRAFT_03633 0.64 +0.6 143,523 - H281DRAFT_03633 0.78 -0.1 143,575 + H281DRAFT_03633 0.82 -0.7 143,576 - H281DRAFT_03633 0.82 +1.0 143,657 + +0.2 143,657 + -0.1 143,657 + -1.7 143,658 - +0.4 143,957 - +0.1 143,992 - +0.1 144,016 + -1.2 144,083 + -0.4 144,084 - +0.4 144,084 - -1.4 144,296 + H281DRAFT_03634 0.30 +0.8 144,296 + H281DRAFT_03634 0.30 -0.4 144,412 - H281DRAFT_03634 0.66 +0.3 144,470 + H281DRAFT_03634 0.85 -0.4 144,633 - H281DRAFT_03635 0.37 +0.9 144,829 - -0.8 144,928 + -1.3 144,952 + -1.2 144,953 - +0.4 144,953 - +0.6 144,958 + +0.2 145,336 + H281DRAFT_03636 0.41 -2.2 145,381 + H281DRAFT_03636 0.45 -0.3
Or see this region's nucleotide sequence