Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03633

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03632 and H281DRAFT_03633 are separated by 14 nucleotidesH281DRAFT_03633 and H281DRAFT_03634 are separated by 439 nucleotidesH281DRAFT_03634 and H281DRAFT_03635 are separated by 1 nucleotides H281DRAFT_03632: H281DRAFT_03632 - transcriptional regulator, IclR family, at 141,665 to 142,675 _03632 H281DRAFT_03633: H281DRAFT_03633 - Outer membrane protein (porin), at 142,690 to 143,763 _03633 H281DRAFT_03634: H281DRAFT_03634 - 3-phenylpropionate/trans-cinnamate dioxygenase ferredoxin subunit, at 144,203 to 144,517 _03634 H281DRAFT_03635: H281DRAFT_03635 - hypothetical protein, at 144,519 to 144,830 _03635 Position (kb) 142 143 144Strain fitness (log2 ratio) -1 0 1 2at 141.857 kb on + strand, within H281DRAFT_03632at 141.858 kb on - strand, within H281DRAFT_03632at 141.858 kb on - strand, within H281DRAFT_03632at 141.921 kb on + strand, within H281DRAFT_03632at 141.967 kb on + strand, within H281DRAFT_03632at 141.968 kb on - strand, within H281DRAFT_03632at 141.968 kb on - strand, within H281DRAFT_03632at 142.035 kb on - strand, within H281DRAFT_03632at 142.060 kb on - strand, within H281DRAFT_03632at 142.300 kb on + strand, within H281DRAFT_03632at 142.325 kb on + strand, within H281DRAFT_03632at 142.385 kb on + strand, within H281DRAFT_03632at 142.386 kb on - strand, within H281DRAFT_03632at 142.793 kb on + strandat 142.794 kb on - strandat 142.808 kb on + strand, within H281DRAFT_03633at 142.835 kb on + strand, within H281DRAFT_03633at 142.835 kb on + strand, within H281DRAFT_03633at 142.835 kb on + strand, within H281DRAFT_03633at 142.946 kb on + strand, within H281DRAFT_03633at 142.946 kb on + strand, within H281DRAFT_03633at 142.997 kb on + strand, within H281DRAFT_03633at 142.997 kb on + strand, within H281DRAFT_03633at 142.997 kb on + strand, within H281DRAFT_03633at 142.998 kb on - strand, within H281DRAFT_03633at 142.998 kb on - strand, within H281DRAFT_03633at 143.030 kb on + strandat 143.031 kb on - strand, within H281DRAFT_03633at 143.031 kb on - strand, within H281DRAFT_03633at 143.073 kb on - strand, within H281DRAFT_03633at 143.073 kb on - strand, within H281DRAFT_03633at 143.073 kb on - strand, within H281DRAFT_03633at 143.183 kb on + strand, within H281DRAFT_03633at 143.187 kb on + strand, within H281DRAFT_03633at 143.188 kb on - strand, within H281DRAFT_03633at 143.376 kb on - strand, within H281DRAFT_03633at 143.523 kb on - strand, within H281DRAFT_03633at 143.575 kb on + strand, within H281DRAFT_03633at 143.576 kb on - strand, within H281DRAFT_03633at 143.657 kb on + strandat 143.657 kb on + strandat 143.657 kb on + strandat 143.658 kb on - strandat 143.957 kb on - strandat 143.992 kb on - strandat 144.016 kb on + strandat 144.083 kb on + strandat 144.084 kb on - strandat 144.084 kb on - strandat 144.296 kb on + strand, within H281DRAFT_03634at 144.296 kb on + strand, within H281DRAFT_03634at 144.412 kb on - strand, within H281DRAFT_03634at 144.470 kb on + strand, within H281DRAFT_03634at 144.633 kb on - strand, within H281DRAFT_03635

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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141,857 + H281DRAFT_03632 0.19 +0.3
141,858 - H281DRAFT_03632 0.19 +1.9
141,858 - H281DRAFT_03632 0.19 -0.6
141,921 + H281DRAFT_03632 0.25 -0.0
141,967 + H281DRAFT_03632 0.30 +0.1
141,968 - H281DRAFT_03632 0.30 -0.9
141,968 - H281DRAFT_03632 0.30 +0.1
142,035 - H281DRAFT_03632 0.37 -0.9
142,060 - H281DRAFT_03632 0.39 -0.9
142,300 + H281DRAFT_03632 0.63 -1.0
142,325 + H281DRAFT_03632 0.65 -0.3
142,385 + H281DRAFT_03632 0.71 -0.7
142,386 - H281DRAFT_03632 0.71 -1.6
142,793 + +0.6
142,794 - +0.1
142,808 + H281DRAFT_03633 0.11 +0.8
142,835 + H281DRAFT_03633 0.14 +0.1
142,835 + H281DRAFT_03633 0.14 -0.4
142,835 + H281DRAFT_03633 0.14 +0.4
142,946 + H281DRAFT_03633 0.24 +0.9
142,946 + H281DRAFT_03633 0.24 -0.2
142,997 + H281DRAFT_03633 0.29 +0.7
142,997 + H281DRAFT_03633 0.29 -0.1
142,997 + H281DRAFT_03633 0.29 -0.7
142,998 - H281DRAFT_03633 0.29 -0.1
142,998 - H281DRAFT_03633 0.29 +1.1
143,030 + +2.5
143,031 - H281DRAFT_03633 0.32 +0.2
143,031 - H281DRAFT_03633 0.32 -1.3
143,073 - H281DRAFT_03633 0.36 -1.0
143,073 - H281DRAFT_03633 0.36 +0.3
143,073 - H281DRAFT_03633 0.36 +0.8
143,183 + H281DRAFT_03633 0.46 -0.0
143,187 + H281DRAFT_03633 0.46 -1.0
143,188 - H281DRAFT_03633 0.46 -0.8
143,376 - H281DRAFT_03633 0.64 +0.6
143,523 - H281DRAFT_03633 0.78 -0.1
143,575 + H281DRAFT_03633 0.82 -0.7
143,576 - H281DRAFT_03633 0.82 +1.0
143,657 + +0.2
143,657 + -0.1
143,657 + -1.7
143,658 - +0.4
143,957 - +0.1
143,992 - +0.1
144,016 + -1.2
144,083 + -0.4
144,084 - +0.4
144,084 - -1.4
144,296 + H281DRAFT_03634 0.30 +0.8
144,296 + H281DRAFT_03634 0.30 -0.4
144,412 - H281DRAFT_03634 0.66 +0.3
144,470 + H281DRAFT_03634 0.85 -0.4
144,633 - H281DRAFT_03635 0.37 +0.9

Or see this region's nucleotide sequence