Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03479

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03478 and H281DRAFT_03479 are separated by 194 nucleotidesH281DRAFT_03479 and H281DRAFT_03480 are separated by 211 nucleotides H281DRAFT_03478: H281DRAFT_03478 - Predicted unusual protein kinase regulating ubiquinone biosynthesis, AarF/ABC1/UbiB family, at 560,606 to 562,165 _03478 H281DRAFT_03479: H281DRAFT_03479 - hypothetical protein, at 562,360 to 562,539 _03479 H281DRAFT_03480: H281DRAFT_03480 - 4-hydroxybenzoate polyprenyltransferase, at 562,751 to 564,172 _03480 Position (kb) 562 563Strain fitness (log2 ratio) -3 -2 -1 0 1at 561.481 kb on + strand, within H281DRAFT_03478at 561.482 kb on - strandat 561.492 kb on - strand, within H281DRAFT_03478at 562.556 kb on + strandat 562.866 kb on + strandat 562.952 kb on + strand, within H281DRAFT_03480at 563.007 kb on + strand, within H281DRAFT_03480at 563.013 kb on + strand, within H281DRAFT_03480at 563.057 kb on + strand, within H281DRAFT_03480at 563.058 kb on - strand, within H281DRAFT_03480

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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561,481 + H281DRAFT_03478 0.56 -0.6
561,482 - +0.9
561,492 - H281DRAFT_03478 0.57 +0.6
562,556 + -0.0
562,866 + -0.1
562,952 + H281DRAFT_03480 0.14 +1.2
563,007 + H281DRAFT_03480 0.18 -3.4
563,013 + H281DRAFT_03480 0.18 +0.3
563,057 + H281DRAFT_03480 0.22 +0.9
563,058 - H281DRAFT_03480 0.22 +1.1

Or see this region's nucleotide sequence