Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03008 and H281DRAFT_03009 are separated by 101 nucleotides H281DRAFT_03009 and H281DRAFT_03010 are separated by 82 nucleotides H281DRAFT_03010 and H281DRAFT_03011 are separated by 63 nucleotides
H281DRAFT_03008: H281DRAFT_03008 - formyl-CoA transferase, at 34,033 to 35,280
_03008
H281DRAFT_03009: H281DRAFT_03009 - acetyl coenzyme A synthetase (ADP forming), alpha domain-containing protein, at 35,382 to 37,577
_03009
H281DRAFT_03010: H281DRAFT_03010 - 2-keto-4-pentenoate hydratase/2-oxohepta-3-ene-1,7-dioic acid hydratase (catechol pathway), at 37,660 to 38,481
_03010
H281DRAFT_03011: H281DRAFT_03011 - NAD(P) transhydrogenase subunit beta, at 38,545 to 39,579
_03011
Position (kb) 35
36
37
38 Strain fitness (log2 ratio) -2
-1
0
1 at 34.426 kb on + strand, within H281DRAFT_03008 at 34.427 kb on - strand, within H281DRAFT_03008 at 34.828 kb on + strand, within H281DRAFT_03008 at 34.950 kb on + strand, within H281DRAFT_03008 at 35.279 kb on - strand at 35.288 kb on - strand at 35.299 kb on - strand at 35.388 kb on + strand at 35.909 kb on + strand, within H281DRAFT_03009 at 36.137 kb on - strand, within H281DRAFT_03009 at 36.984 kb on + strand, within H281DRAFT_03009 at 37.474 kb on - strand at 37.545 kb on + strand at 37.665 kb on + strand at 37.665 kb on + strand at 37.726 kb on + strand at 37.726 kb on + strand at 37.846 kb on + strand, within H281DRAFT_03010 at 38.334 kb on + strand, within H281DRAFT_03010 at 38.413 kb on - strand at 38.413 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 34,426 + H281DRAFT_03008 0.31 -0.4 34,427 - H281DRAFT_03008 0.32 -0.8 34,828 + H281DRAFT_03008 0.64 +1.0 34,950 + H281DRAFT_03008 0.73 +0.7 35,279 - +0.0 35,288 - +1.6 35,299 - +1.0 35,388 + -0.2 35,909 + H281DRAFT_03009 0.24 -0.5 36,137 - H281DRAFT_03009 0.34 -2.0 36,984 + H281DRAFT_03009 0.73 -0.9 37,474 - -0.0 37,545 + -0.1 37,665 + +0.6 37,665 + -0.1 37,726 + -0.6 37,726 + -0.2 37,846 + H281DRAFT_03010 0.23 -0.5 38,334 + H281DRAFT_03010 0.82 -0.0 38,413 - -0.4 38,413 - +0.0
Or see this region's nucleotide sequence