Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_03007

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_03006 and H281DRAFT_03007 are separated by 513 nucleotidesH281DRAFT_03007 and H281DRAFT_03008 are separated by 24 nucleotides H281DRAFT_03006: H281DRAFT_03006 - transcriptional regulator, GntR family, at 31,012 to 31,731 _03006 H281DRAFT_03007: H281DRAFT_03007 - acetolactate synthase-1/2/3 large subunit, at 32,245 to 34,008 _03007 H281DRAFT_03008: H281DRAFT_03008 - formyl-CoA transferase, at 34,033 to 35,280 _03008 Position (kb) 32 33 34 35Strain fitness (log2 ratio) -2 -1 0 1at 31.282 kb on + strand, within H281DRAFT_03006at 31.536 kb on + strand, within H281DRAFT_03006at 31.616 kb on + strand, within H281DRAFT_03006at 31.616 kb on + strand, within H281DRAFT_03006at 31.737 kb on + strandat 31.737 kb on + strandat 31.737 kb on + strandat 31.738 kb on - strandat 31.738 kb on - strandat 31.897 kb on + strandat 32.152 kb on + strandat 32.167 kb on - strandat 32.167 kb on - strandat 32.426 kb on - strand, within H281DRAFT_03007at 32.794 kb on + strand, within H281DRAFT_03007at 32.794 kb on + strand, within H281DRAFT_03007at 32.795 kb on - strand, within H281DRAFT_03007at 32.795 kb on - strand, within H281DRAFT_03007at 32.816 kb on + strand, within H281DRAFT_03007at 32.816 kb on + strand, within H281DRAFT_03007at 32.960 kb on - strand, within H281DRAFT_03007at 33.012 kb on - strand, within H281DRAFT_03007at 33.125 kb on + strand, within H281DRAFT_03007at 33.125 kb on + strand, within H281DRAFT_03007at 33.183 kb on + strand, within H281DRAFT_03007at 33.290 kb on + strand, within H281DRAFT_03007at 33.290 kb on + strand, within H281DRAFT_03007at 33.290 kb on + strand, within H281DRAFT_03007at 33.343 kb on - strand, within H281DRAFT_03007at 33.445 kb on + strand, within H281DRAFT_03007at 33.481 kb on + strand, within H281DRAFT_03007at 33.482 kb on - strand, within H281DRAFT_03007at 33.482 kb on - strand, within H281DRAFT_03007at 34.207 kb on + strand, within H281DRAFT_03008at 34.252 kb on - strand, within H281DRAFT_03008at 34.426 kb on + strand, within H281DRAFT_03008at 34.427 kb on - strand, within H281DRAFT_03008at 34.828 kb on + strand, within H281DRAFT_03008at 34.950 kb on + strand, within H281DRAFT_03008

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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31,282 + H281DRAFT_03006 0.38 -1.3
31,536 + H281DRAFT_03006 0.73 -1.6
31,616 + H281DRAFT_03006 0.84 -0.7
31,616 + H281DRAFT_03006 0.84 +0.3
31,737 + +0.8
31,737 + -0.6
31,737 + -0.6
31,738 - -0.3
31,738 - -0.1
31,897 + +1.0
32,152 + -0.4
32,167 - +0.2
32,167 - -0.2
32,426 - H281DRAFT_03007 0.10 -1.8
32,794 + H281DRAFT_03007 0.31 -0.2
32,794 + H281DRAFT_03007 0.31 +0.7
32,795 - H281DRAFT_03007 0.31 -0.8
32,795 - H281DRAFT_03007 0.31 -0.2
32,816 + H281DRAFT_03007 0.32 +1.4
32,816 + H281DRAFT_03007 0.32 +0.7
32,960 - H281DRAFT_03007 0.41 -0.5
33,012 - H281DRAFT_03007 0.43 +0.4
33,125 + H281DRAFT_03007 0.50 +1.5
33,125 + H281DRAFT_03007 0.50 +0.3
33,183 + H281DRAFT_03007 0.53 -0.7
33,290 + H281DRAFT_03007 0.59 -0.6
33,290 + H281DRAFT_03007 0.59 -1.7
33,290 + H281DRAFT_03007 0.59 -1.0
33,343 - H281DRAFT_03007 0.62 +0.3
33,445 + H281DRAFT_03007 0.68 +0.4
33,481 + H281DRAFT_03007 0.70 -0.1
33,482 - H281DRAFT_03007 0.70 +0.2
33,482 - H281DRAFT_03007 0.70 +0.4
34,207 + H281DRAFT_03008 0.14 -0.6
34,252 - H281DRAFT_03008 0.18 +0.7
34,426 + H281DRAFT_03008 0.31 -0.4
34,427 - H281DRAFT_03008 0.32 -0.8
34,828 + H281DRAFT_03008 0.64 +1.0
34,950 + H281DRAFT_03008 0.73 +0.7

Or see this region's nucleotide sequence