Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_03004 and H281DRAFT_03005 are separated by 356 nucleotides H281DRAFT_03005 and H281DRAFT_03006 overlap by 23 nucleotides H281DRAFT_03006 and H281DRAFT_03007 are separated by 513 nucleotides
H281DRAFT_03004: H281DRAFT_03004 - MFS transporter, MHS family, shikimate and dehydroshikimate transport protein, at 29,143 to 30,459
_03004
H281DRAFT_03005: H281DRAFT_03005 - hypothetical protein, at 30,816 to 31,034
_03005
H281DRAFT_03006: H281DRAFT_03006 - transcriptional regulator, GntR family, at 31,012 to 31,731
_03006
H281DRAFT_03007: H281DRAFT_03007 - acetolactate synthase-1/2/3 large subunit, at 32,245 to 34,008
_03007
Position (kb)
31
32 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2 at 30.118 kb on + strand, within H281DRAFT_03004 at 30.118 kb on + strand, within H281DRAFT_03004 at 30.118 kb on + strand, within H281DRAFT_03004 at 30.119 kb on - strand, within H281DRAFT_03004 at 30.121 kb on + strand, within H281DRAFT_03004 at 30.169 kb on + strand, within H281DRAFT_03004 at 30.169 kb on + strand, within H281DRAFT_03004 at 30.289 kb on + strand, within H281DRAFT_03004 at 30.459 kb on + strand at 30.460 kb on - strand at 30.510 kb on + strand at 30.510 kb on + strand at 30.551 kb on + strand at 30.551 kb on + strand at 30.552 kb on - strand at 30.554 kb on + strand at 30.554 kb on + strand at 30.591 kb on - strand at 30.640 kb on + strand at 30.643 kb on - strand at 30.663 kb on - strand at 30.663 kb on - strand at 30.697 kb on + strand at 30.698 kb on - strand at 30.702 kb on + strand at 30.738 kb on + strand at 30.775 kb on - strand at 30.986 kb on + strand, within H281DRAFT_03005 at 30.986 kb on + strand, within H281DRAFT_03005 at 30.986 kb on + strand, within H281DRAFT_03005 at 30.987 kb on - strand, within H281DRAFT_03005 at 30.987 kb on - strand, within H281DRAFT_03005 at 31.064 kb on + strand at 31.064 kb on + strand at 31.105 kb on + strand, within H281DRAFT_03006 at 31.144 kb on + strand, within H281DRAFT_03006 at 31.144 kb on + strand, within H281DRAFT_03006 at 31.145 kb on - strand, within H281DRAFT_03006 at 31.282 kb on + strand, within H281DRAFT_03006 at 31.536 kb on + strand, within H281DRAFT_03006 at 31.616 kb on + strand, within H281DRAFT_03006 at 31.616 kb on + strand, within H281DRAFT_03006 at 31.737 kb on + strand at 31.737 kb on + strand at 31.737 kb on + strand at 31.738 kb on - strand at 31.738 kb on - strand at 31.897 kb on + strand at 32.152 kb on + strand at 32.167 kb on - strand at 32.167 kb on - strand at 32.426 kb on - strand, within H281DRAFT_03007
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 30,118 + H281DRAFT_03004 0.74 +0.1 30,118 + H281DRAFT_03004 0.74 +0.4 30,118 + H281DRAFT_03004 0.74 -1.0 30,119 - H281DRAFT_03004 0.74 +1.0 30,121 + H281DRAFT_03004 0.74 +0.6 30,169 + H281DRAFT_03004 0.78 +0.3 30,169 + H281DRAFT_03004 0.78 -1.1 30,289 + H281DRAFT_03004 0.87 +0.1 30,459 + -0.8 30,460 - +1.4 30,510 + -0.7 30,510 + +0.2 30,551 + -0.2 30,551 + -0.3 30,552 - -0.3 30,554 + -0.3 30,554 + -0.1 30,591 - -0.3 30,640 + +2.3 30,643 - -0.5 30,663 - +0.4 30,663 - -1.5 30,697 + +2.6 30,698 - +0.7 30,702 + -1.0 30,738 + -0.7 30,775 - +0.5 30,986 + H281DRAFT_03005 0.78 -0.0 30,986 + H281DRAFT_03005 0.78 -2.9 30,986 + H281DRAFT_03005 0.78 +0.2 30,987 - H281DRAFT_03005 0.78 +1.7 30,987 - H281DRAFT_03005 0.78 +0.2 31,064 + +1.7 31,064 + +0.2 31,105 + H281DRAFT_03006 0.13 -2.3 31,144 + H281DRAFT_03006 0.18 -0.8 31,144 + H281DRAFT_03006 0.18 -0.3 31,145 - H281DRAFT_03006 0.18 -1.2 31,282 + H281DRAFT_03006 0.38 -1.3 31,536 + H281DRAFT_03006 0.73 -1.6 31,616 + H281DRAFT_03006 0.84 -0.7 31,616 + H281DRAFT_03006 0.84 +0.3 31,737 + +0.8 31,737 + -0.6 31,737 + -0.6 31,738 - -0.3 31,738 - -0.1 31,897 + +1.0 32,152 + -0.4 32,167 - +0.2 32,167 - -0.2 32,426 - H281DRAFT_03007 0.10 -1.8
Or see this region's nucleotide sequence