Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02999

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02998 and H281DRAFT_02999 are separated by 184 nucleotidesH281DRAFT_02999 and H281DRAFT_03000 are separated by 506 nucleotides H281DRAFT_02998: H281DRAFT_02998 - transcriptional regulator, LuxR family, at 20,883 to 21,878 _02998 H281DRAFT_02999: H281DRAFT_02999 - transcriptional regulator, AraC family, at 22,063 to 22,977 _02999 H281DRAFT_03000: H281DRAFT_03000 - hypothetical protein, at 23,484 to 23,909 _03000 Position (kb) 22 23Strain fitness (log2 ratio) -2 -1 0 1 2at 21.100 kb on - strand, within H281DRAFT_02998at 21.421 kb on + strand, within H281DRAFT_02998at 21.422 kb on - strand, within H281DRAFT_02998at 21.464 kb on - strand, within H281DRAFT_02998at 21.517 kb on + strand, within H281DRAFT_02998at 21.518 kb on - strand, within H281DRAFT_02998at 21.518 kb on - strand, within H281DRAFT_02998at 21.799 kb on + strandat 21.799 kb on + strandat 21.800 kb on - strandat 21.800 kb on - strandat 21.800 kb on - strandat 21.924 kb on - strandat 21.930 kb on + strandat 21.930 kb on + strandat 21.931 kb on - strandat 21.934 kb on + strandat 21.934 kb on + strandat 21.935 kb on - strandat 22.109 kb on - strandat 22.175 kb on - strand, within H281DRAFT_02999at 22.321 kb on + strand, within H281DRAFT_02999at 22.322 kb on - strandat 22.391 kb on + strand, within H281DRAFT_02999at 22.391 kb on + strand, within H281DRAFT_02999at 22.395 kb on + strand, within H281DRAFT_02999at 22.396 kb on - strand, within H281DRAFT_02999at 22.396 kb on - strand, within H281DRAFT_02999at 22.558 kb on + strand, within H281DRAFT_02999at 22.558 kb on + strand, within H281DRAFT_02999at 22.558 kb on + strand, within H281DRAFT_02999at 22.607 kb on - strand, within H281DRAFT_02999at 22.690 kb on + strand, within H281DRAFT_02999at 22.690 kb on + strand, within H281DRAFT_02999at 22.690 kb on + strand, within H281DRAFT_02999at 22.690 kb on + strand, within H281DRAFT_02999at 22.691 kb on - strand, within H281DRAFT_02999at 22.694 kb on + strand, within H281DRAFT_02999at 22.694 kb on + strand, within H281DRAFT_02999at 22.694 kb on + strand, within H281DRAFT_02999at 22.694 kb on + strand, within H281DRAFT_02999at 22.751 kb on + strand, within H281DRAFT_02999at 22.810 kb on + strand, within H281DRAFT_02999at 22.922 kb on + strandat 22.940 kb on - strandat 23.021 kb on + strandat 23.022 kb on - strandat 23.160 kb on + strandat 23.160 kb on + strandat 23.160 kb on + strandat 23.175 kb on - strandat 23.262 kb on - strandat 23.365 kb on + strandat 23.365 kb on + strandat 23.366 kb on - strandat 23.366 kb on - strandat 23.366 kb on - strandat 23.475 kb on + strandat 23.479 kb on + strandat 23.480 kb on - strandat 23.523 kb on - strandat 23.764 kb on - strand, within H281DRAFT_03000at 23.764 kb on - strandat 23.890 kb on + strandat 23.890 kb on + strandat 23.891 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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21,100 - H281DRAFT_02998 0.22 +0.6
21,421 + H281DRAFT_02998 0.54 +0.4
21,422 - H281DRAFT_02998 0.54 +1.2
21,464 - H281DRAFT_02998 0.58 +0.2
21,517 + H281DRAFT_02998 0.64 +0.3
21,518 - H281DRAFT_02998 0.64 -0.5
21,518 - H281DRAFT_02998 0.64 +0.1
21,799 + -0.8
21,799 + -0.4
21,800 - -0.1
21,800 - -0.3
21,800 - +0.1
21,924 - -0.6
21,930 + -0.4
21,930 + -0.3
21,931 - -1.0
21,934 + -0.3
21,934 + +0.4
21,935 - +0.1
22,109 - -0.8
22,175 - H281DRAFT_02999 0.12 +0.6
22,321 + H281DRAFT_02999 0.28 -2.5
22,322 - -0.6
22,391 + H281DRAFT_02999 0.36 -0.3
22,391 + H281DRAFT_02999 0.36 +0.2
22,395 + H281DRAFT_02999 0.36 +0.2
22,396 - H281DRAFT_02999 0.36 +1.3
22,396 - H281DRAFT_02999 0.36 +0.5
22,558 + H281DRAFT_02999 0.54 +1.0
22,558 + H281DRAFT_02999 0.54 -0.1
22,558 + H281DRAFT_02999 0.54 -0.3
22,607 - H281DRAFT_02999 0.59 +1.0
22,690 + H281DRAFT_02999 0.69 -0.9
22,690 + H281DRAFT_02999 0.69 -1.2
22,690 + H281DRAFT_02999 0.69 -0.6
22,690 + H281DRAFT_02999 0.69 -0.2
22,691 - H281DRAFT_02999 0.69 +1.5
22,694 + H281DRAFT_02999 0.69 +0.4
22,694 + H281DRAFT_02999 0.69 +1.4
22,694 + H281DRAFT_02999 0.69 -0.7
22,694 + H281DRAFT_02999 0.69 +0.0
22,751 + H281DRAFT_02999 0.75 -0.7
22,810 + H281DRAFT_02999 0.82 -0.8
22,922 + +1.7
22,940 - -1.6
23,021 + -2.3
23,022 - -1.8
23,160 + +0.1
23,160 + -0.5
23,160 + +0.2
23,175 - -0.4
23,262 - +0.3
23,365 + -0.7
23,365 + -0.8
23,366 - +0.3
23,366 - +1.8
23,366 - -0.6
23,475 + -1.4
23,479 + +1.8
23,480 - +1.0
23,523 - -0.2
23,764 - H281DRAFT_03000 0.66 +1.0
23,764 - +2.6
23,890 + -0.3
23,890 + +0.6
23,891 - -0.2

Or see this region's nucleotide sequence