Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02865

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02863 and H281DRAFT_02864 are separated by 9 nucleotidesH281DRAFT_02864 and H281DRAFT_02865 are separated by 0 nucleotidesH281DRAFT_02865 and H281DRAFT_02866 overlap by 4 nucleotides H281DRAFT_02863: H281DRAFT_02863 - precorrin-3B synthase, at 456,091 to 457,698 _02863 H281DRAFT_02864: H281DRAFT_02864 - precorrin-8X methylmutase, at 457,708 to 458,334 _02864 H281DRAFT_02865: H281DRAFT_02865 - precorrin-2 C20-methyltransferase /cobalt-factor II C20-methyltransferase, at 458,335 to 459,075 _02865 H281DRAFT_02866: H281DRAFT_02866 - precorrin-3 methyltransferase (EC 2.1.1.131), at 459,072 to 460,826 _02866 Position (kb) 458 459 460Strain fitness (log2 ratio) -1 0 1 2at 457.585 kb on + strandat 457.586 kb on - strandat 457.586 kb on - strandat 457.717 kb on + strandat 457.741 kb on + strandat 457.742 kb on - strandat 458.002 kb on - strand, within H281DRAFT_02864at 458.254 kb on + strand, within H281DRAFT_02864at 458.254 kb on + strand, within H281DRAFT_02864at 458.254 kb on + strand, within H281DRAFT_02864at 458.364 kb on - strandat 458.364 kb on - strandat 458.364 kb on - strandat 458.364 kb on - strandat 458.366 kb on - strandat 458.409 kb on - strand, within H281DRAFT_02865at 458.450 kb on - strand, within H281DRAFT_02865at 458.537 kb on - strand, within H281DRAFT_02865at 458.575 kb on + strand, within H281DRAFT_02865at 458.575 kb on + strand, within H281DRAFT_02865at 458.618 kb on + strand, within H281DRAFT_02865at 458.618 kb on + strand, within H281DRAFT_02865at 458.693 kb on - strand, within H281DRAFT_02865at 458.693 kb on - strand, within H281DRAFT_02865at 458.698 kb on + strand, within H281DRAFT_02865at 458.698 kb on + strand, within H281DRAFT_02865at 458.699 kb on - strand, within H281DRAFT_02865at 458.699 kb on - strand, within H281DRAFT_02865at 458.699 kb on - strand, within H281DRAFT_02865at 458.725 kb on + strand, within H281DRAFT_02865at 459.032 kb on - strandat 459.142 kb on - strandat 459.228 kb on + strandat 459.229 kb on - strandat 459.518 kb on + strand, within H281DRAFT_02866at 459.967 kb on + strand, within H281DRAFT_02866at 459.968 kb on - strand, within H281DRAFT_02866at 460.037 kb on - strand, within H281DRAFT_02866

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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457,585 + +0.2
457,586 - +0.9
457,586 - +2.4
457,717 + +0.1
457,741 + -0.0
457,742 - +0.9
458,002 - H281DRAFT_02864 0.47 +1.9
458,254 + H281DRAFT_02864 0.87 +1.9
458,254 + H281DRAFT_02864 0.87 +1.2
458,254 + H281DRAFT_02864 0.87 +0.4
458,364 - +0.9
458,364 - +0.6
458,364 - +0.2
458,364 - +0.4
458,366 - +0.6
458,409 - H281DRAFT_02865 0.10 +0.5
458,450 - H281DRAFT_02865 0.16 +1.8
458,537 - H281DRAFT_02865 0.27 +0.9
458,575 + H281DRAFT_02865 0.32 +0.9
458,575 + H281DRAFT_02865 0.32 +1.5
458,618 + H281DRAFT_02865 0.38 +0.4
458,618 + H281DRAFT_02865 0.38 +1.2
458,693 - H281DRAFT_02865 0.48 +0.6
458,693 - H281DRAFT_02865 0.48 +0.7
458,698 + H281DRAFT_02865 0.49 -0.3
458,698 + H281DRAFT_02865 0.49 +2.3
458,699 - H281DRAFT_02865 0.49 +0.9
458,699 - H281DRAFT_02865 0.49 +0.8
458,699 - H281DRAFT_02865 0.49 +0.6
458,725 + H281DRAFT_02865 0.53 +0.9
459,032 - +0.2
459,142 - +1.0
459,228 + +0.5
459,229 - +0.6
459,518 + H281DRAFT_02866 0.25 +1.2
459,967 + H281DRAFT_02866 0.51 +1.9
459,968 - H281DRAFT_02866 0.51 +1.0
460,037 - H281DRAFT_02866 0.55 +0.7

Or see this region's nucleotide sequence