Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02628

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02627 and H281DRAFT_02628 are separated by 104 nucleotidesH281DRAFT_02628 and H281DRAFT_02629 are separated by 14 nucleotides H281DRAFT_02627: H281DRAFT_02627 - transcriptional regulator, LacI family, at 203,297 to 204,301 _02627 H281DRAFT_02628: H281DRAFT_02628 - hypothetical protein, at 204,406 to 204,501 _02628 H281DRAFT_02629: H281DRAFT_02629 - carbohydrate ABC transporter ATP-binding protein, CUT1 family (TC 3.A.1.1.-), at 204,516 to 205,661 _02629 Position (kb) 204 205Strain fitness (log2 ratio) -1 0 1at 204.376 kb on - strandat 204.622 kb on + strandat 204.622 kb on + strandat 205.473 kb on + strand, within H281DRAFT_02629at 205.474 kb on - strand, within H281DRAFT_02629

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
remove
204,376 - +1.3
204,622 + +0.4
204,622 + +1.5
205,473 + H281DRAFT_02629 0.84 +0.3
205,474 - H281DRAFT_02629 0.84 -0.1

Or see this region's nucleotide sequence