Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02587

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02586 and H281DRAFT_02587 are separated by 242 nucleotidesH281DRAFT_02587 and H281DRAFT_02588 are separated by 355 nucleotides H281DRAFT_02586: H281DRAFT_02586 - Cytochrome c, mono- and diheme variants, at 160,340 to 161,176 _02586 H281DRAFT_02587: H281DRAFT_02587 - Phospholipase/lecithinase/hemolysin, at 161,419 to 162,438 _02587 H281DRAFT_02588: H281DRAFT_02588 - PRC-barrel domain-containing protein, at 162,794 to 163,216 _02588 Position (kb) 161 162 163Strain fitness (log2 ratio) -3 -2 -1 0 1at 160.883 kb on + strand, within H281DRAFT_02586at 160.946 kb on - strand, within H281DRAFT_02586at 160.993 kb on + strand, within H281DRAFT_02586at 160.999 kb on - strand, within H281DRAFT_02586at 161.084 kb on + strand, within H281DRAFT_02586at 161.263 kb on - strandat 161.348 kb on + strandat 161.349 kb on - strandat 161.353 kb on + strandat 161.460 kb on - strandat 161.460 kb on - strandat 161.516 kb on + strandat 161.516 kb on + strandat 161.516 kb on + strandat 161.517 kb on - strandat 161.517 kb on - strandat 161.517 kb on - strandat 161.544 kb on - strand, within H281DRAFT_02587at 161.863 kb on + strand, within H281DRAFT_02587at 161.863 kb on + strand, within H281DRAFT_02587at 162.264 kb on - strand, within H281DRAFT_02587at 162.379 kb on + strandat 162.415 kb on + strandat 162.453 kb on - strandat 162.513 kb on - strandat 162.610 kb on + strandat 162.620 kb on + strandat 162.621 kb on - strandat 162.873 kb on - strand, within H281DRAFT_02588at 162.873 kb on - strand, within H281DRAFT_02588at 163.020 kb on + strand, within H281DRAFT_02588at 163.030 kb on + strand, within H281DRAFT_02588at 163.031 kb on - strand, within H281DRAFT_02588at 163.336 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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160,883 + H281DRAFT_02586 0.65 -0.2
160,946 - H281DRAFT_02586 0.72 +0.0
160,993 + H281DRAFT_02586 0.78 +0.3
160,999 - H281DRAFT_02586 0.79 -0.3
161,084 + H281DRAFT_02586 0.89 -0.1
161,263 - -0.6
161,348 + -0.0
161,349 - +0.8
161,353 + +0.1
161,460 - -0.0
161,460 - -0.1
161,516 + -0.5
161,516 + -0.1
161,516 + -1.2
161,517 - +0.7
161,517 - -0.1
161,517 - -0.9
161,544 - H281DRAFT_02587 0.12 -0.8
161,863 + H281DRAFT_02587 0.44 +0.2
161,863 + H281DRAFT_02587 0.44 -0.3
162,264 - H281DRAFT_02587 0.83 +0.1
162,379 + -3.4
162,415 + -0.2
162,453 - -0.1
162,513 - -0.9
162,610 + -0.5
162,620 + -0.1
162,621 - -0.2
162,873 - H281DRAFT_02588 0.19 -0.7
162,873 - H281DRAFT_02588 0.19 -0.1
163,020 + H281DRAFT_02588 0.53 +0.5
163,030 + H281DRAFT_02588 0.56 +1.6
163,031 - H281DRAFT_02588 0.56 +0.3
163,336 - -0.6

Or see this region's nucleotide sequence