Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02505

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02503 and H281DRAFT_02504 are separated by 143 nucleotidesH281DRAFT_02504 and H281DRAFT_02505 are separated by 222 nucleotidesH281DRAFT_02505 and H281DRAFT_02506 are separated by 67 nucleotidesH281DRAFT_02506 and H281DRAFT_02507 are separated by 27 nucleotides H281DRAFT_02503: H281DRAFT_02503 - Peroxiredoxin, at 80,603 to 81,325 _02503 H281DRAFT_02504: H281DRAFT_02504 - Alkylhydroperoxidase family enzyme, contains CxxC motif, at 81,469 to 82,029 _02504 H281DRAFT_02505: H281DRAFT_02505 - hypothetical protein, at 82,252 to 82,653 _02505 H281DRAFT_02506: H281DRAFT_02506 - hypothetical protein, at 82,721 to 83,320 _02506 H281DRAFT_02507: H281DRAFT_02507 - NAD(P)-dependent dehydrogenase, short-chain alcohol dehydrogenase family, at 83,348 to 84,115 _02507 Position (kb) 82 83Strain fitness (log2 ratio) -1 0 1 2at 81.545 kb on + strand, within H281DRAFT_02504at 81.546 kb on - strandat 81.665 kb on - strand, within H281DRAFT_02504at 82.011 kb on - strandat 82.492 kb on + strand, within H281DRAFT_02505at 82.558 kb on - strand, within H281DRAFT_02505at 82.745 kb on - strandat 83.044 kb on - strand, within H281DRAFT_02506at 83.135 kb on + strand, within H281DRAFT_02506

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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81,545 + H281DRAFT_02504 0.14 +0.5
81,546 - +2.3
81,665 - H281DRAFT_02504 0.35 -0.3
82,011 - +0.8
82,492 + H281DRAFT_02505 0.60 -1.5
82,558 - H281DRAFT_02505 0.76 -0.2
82,745 - -0.1
83,044 - H281DRAFT_02506 0.54 +0.0
83,135 + H281DRAFT_02506 0.69 +0.8

Or see this region's nucleotide sequence