Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02470

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02469 and H281DRAFT_02470 are separated by 54 nucleotidesH281DRAFT_02470 and H281DRAFT_02471 are separated by 33 nucleotides H281DRAFT_02469: H281DRAFT_02469 - membrane dipeptidase, at 38,642 to 39,613 _02469 H281DRAFT_02470: H281DRAFT_02470 - Predicted hydrocarbon binding protein, contains 4VR domain, at 39,668 to 40,204 _02470 H281DRAFT_02471: H281DRAFT_02471 - 2,4-dienoyl-CoA reductase, at 40,238 to 42,301 _02471 Position (kb) 39 40 41Strain fitness (log2 ratio) -1 0 1at 38.719 kb on + strandat 38.826 kb on - strand, within H281DRAFT_02469at 38.945 kb on + strand, within H281DRAFT_02469at 38.993 kb on + strand, within H281DRAFT_02469at 38.994 kb on - strand, within H281DRAFT_02469at 39.026 kb on + strand, within H281DRAFT_02469at 39.026 kb on + strand, within H281DRAFT_02469at 39.628 kb on + strandat 39.629 kb on - strandat 39.686 kb on - strandat 39.773 kb on - strand, within H281DRAFT_02470at 39.807 kb on - strand, within H281DRAFT_02470at 39.833 kb on + strand, within H281DRAFT_02470at 39.835 kb on + strand, within H281DRAFT_02470at 39.836 kb on - strand, within H281DRAFT_02470at 40.047 kb on - strand, within H281DRAFT_02470at 40.047 kb on - strand, within H281DRAFT_02470at 40.203 kb on - strandat 40.267 kb on + strandat 40.268 kb on - strandat 40.358 kb on + strandat 40.360 kb on + strandat 40.474 kb on + strand, within H281DRAFT_02471

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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38,719 + +0.8
38,826 - H281DRAFT_02469 0.19 +0.1
38,945 + H281DRAFT_02469 0.31 +0.6
38,993 + H281DRAFT_02469 0.36 -0.3
38,994 - H281DRAFT_02469 0.36 -0.5
39,026 + H281DRAFT_02469 0.40 +0.8
39,026 + H281DRAFT_02469 0.40 -0.1
39,628 + +0.6
39,629 - -0.3
39,686 - +0.9
39,773 - H281DRAFT_02470 0.20 +0.1
39,807 - H281DRAFT_02470 0.26 -0.1
39,833 + H281DRAFT_02470 0.31 -1.5
39,835 + H281DRAFT_02470 0.31 -0.4
39,836 - H281DRAFT_02470 0.31 -0.9
40,047 - H281DRAFT_02470 0.71 -0.6
40,047 - H281DRAFT_02470 0.71 +0.7
40,203 - -0.2
40,267 + -0.4
40,268 - -0.8
40,358 + -0.0
40,360 + +0.3
40,474 + H281DRAFT_02471 0.11 -0.4

Or see this region's nucleotide sequence