Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02284

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02282 and H281DRAFT_02283 are separated by 138 nucleotidesH281DRAFT_02283 and H281DRAFT_02284 are separated by 133 nucleotidesH281DRAFT_02284 and H281DRAFT_02285 overlap by 11 nucleotides H281DRAFT_02282: H281DRAFT_02282 - hypothetical protein, at 427,558 to 428,106 _02282 H281DRAFT_02283: H281DRAFT_02283 - hypothetical protein, at 428,245 to 428,460 _02283 H281DRAFT_02284: H281DRAFT_02284 - hypothetical protein, at 428,594 to 428,917 _02284 H281DRAFT_02285: H281DRAFT_02285 - Phage integrase family protein, at 428,907 to 430,307 _02285 Position (kb) 428 429Strain fitness (log2 ratio) -2 -1 0 1 2at 427.668 kb on + strand, within H281DRAFT_02282at 427.669 kb on - strand, within H281DRAFT_02282at 427.711 kb on + strand, within H281DRAFT_02282at 427.712 kb on - strand, within H281DRAFT_02282at 427.712 kb on - strand, within H281DRAFT_02282at 427.717 kb on + strand, within H281DRAFT_02282at 427.717 kb on + strand, within H281DRAFT_02282at 427.718 kb on - strandat 427.718 kb on - strand, within H281DRAFT_02282at 427.718 kb on - strand, within H281DRAFT_02282at 427.718 kb on - strand, within H281DRAFT_02282at 427.756 kb on + strand, within H281DRAFT_02282at 427.812 kb on - strand, within H281DRAFT_02282at 427.831 kb on + strand, within H281DRAFT_02282at 427.832 kb on - strand, within H281DRAFT_02282at 427.836 kb on + strand, within H281DRAFT_02282at 427.836 kb on + strand, within H281DRAFT_02282at 427.837 kb on - strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.864 kb on + strand, within H281DRAFT_02282at 427.865 kb on - strand, within H281DRAFT_02282at 427.865 kb on - strand, within H281DRAFT_02282at 427.866 kb on + strand, within H281DRAFT_02282at 427.866 kb on + strand, within H281DRAFT_02282at 428.108 kb on + strandat 428.109 kb on - strandat 428.109 kb on - strandat 428.152 kb on - strandat 428.186 kb on + strandat 428.203 kb on - strandat 428.222 kb on + strandat 428.222 kb on + strandat 428.222 kb on + strandat 428.223 kb on - strandat 428.223 kb on - strandat 428.272 kb on + strand, within H281DRAFT_02283at 428.417 kb on - strand, within H281DRAFT_02283at 428.417 kb on - strand, within H281DRAFT_02283at 428.435 kb on + strand, within H281DRAFT_02283at 428.435 kb on + strand, within H281DRAFT_02283at 428.436 kb on - strand, within H281DRAFT_02283at 428.466 kb on + strandat 428.474 kb on + strandat 428.527 kb on + strandat 428.608 kb on + strandat 428.609 kb on - strandat 428.641 kb on + strand, within H281DRAFT_02284at 428.706 kb on + strand, within H281DRAFT_02284at 428.706 kb on + strand, within H281DRAFT_02284at 428.706 kb on + strand, within H281DRAFT_02284at 428.832 kb on - strand, within H281DRAFT_02284at 429.062 kb on - strand, within H281DRAFT_02285at 429.089 kb on + strand, within H281DRAFT_02285at 429.109 kb on - strand, within H281DRAFT_02285at 429.213 kb on - strand, within H281DRAFT_02285at 429.364 kb on - strand, within H281DRAFT_02285at 429.380 kb on - strand, within H281DRAFT_02285at 429.432 kb on + strand, within H281DRAFT_02285at 429.433 kb on - strand, within H281DRAFT_02285at 429.433 kb on - strand, within H281DRAFT_02285at 429.433 kb on - strand, within H281DRAFT_02285at 429.530 kb on + strand, within H281DRAFT_02285at 429.530 kb on + strand, within H281DRAFT_02285at 429.531 kb on - strand, within H281DRAFT_02285at 429.531 kb on - strand, within H281DRAFT_02285at 429.531 kb on - strand, within H281DRAFT_02285at 429.531 kb on - strand, within H281DRAFT_02285at 429.534 kb on + strand, within H281DRAFT_02285at 429.535 kb on - strand, within H281DRAFT_02285at 429.651 kb on - strand, within H281DRAFT_02285at 429.652 kb on + strand, within H281DRAFT_02285at 429.652 kb on + strand, within H281DRAFT_02285at 429.652 kb on + strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.653 kb on - strand, within H281DRAFT_02285at 429.671 kb on + strand, within H281DRAFT_02285at 429.677 kb on + strand, within H281DRAFT_02285at 429.678 kb on - strand, within H281DRAFT_02285at 429.678 kb on - strand, within H281DRAFT_02285at 429.679 kb on + strand, within H281DRAFT_02285at 429.679 kb on + strand, within H281DRAFT_02285at 429.679 kb on + strand, within H281DRAFT_02285at 429.680 kb on - strand, within H281DRAFT_02285at 429.743 kb on + strand, within H281DRAFT_02285at 429.743 kb on + strand, within H281DRAFT_02285at 429.743 kb on + strand, within H281DRAFT_02285at 429.743 kb on + strand, within H281DRAFT_02285at 429.743 kb on + strand, within H281DRAFT_02285at 429.744 kb on - strand, within H281DRAFT_02285at 429.882 kb on + strand, within H281DRAFT_02285at 429.883 kb on - strand, within H281DRAFT_02285at 429.883 kb on - strand, within H281DRAFT_02285

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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427,668 + H281DRAFT_02282 0.20 +1.1
427,669 - H281DRAFT_02282 0.20 +1.2
427,711 + H281DRAFT_02282 0.28 -0.5
427,712 - H281DRAFT_02282 0.28 +1.3
427,712 - H281DRAFT_02282 0.28 -0.5
427,717 + H281DRAFT_02282 0.29 -0.3
427,717 + H281DRAFT_02282 0.29 -0.6
427,718 - +0.9
427,718 - H281DRAFT_02282 0.29 +0.5
427,718 - H281DRAFT_02282 0.29 -0.9
427,718 - H281DRAFT_02282 0.29 -0.0
427,756 + H281DRAFT_02282 0.36 +0.0
427,812 - H281DRAFT_02282 0.46 -0.8
427,831 + H281DRAFT_02282 0.50 -0.7
427,832 - H281DRAFT_02282 0.50 -0.1
427,836 + H281DRAFT_02282 0.51 -0.3
427,836 + H281DRAFT_02282 0.51 +0.5
427,837 - H281DRAFT_02282 0.51 +1.0
427,864 + H281DRAFT_02282 0.56 +0.3
427,864 + H281DRAFT_02282 0.56 +0.1
427,864 + H281DRAFT_02282 0.56 -0.1
427,864 + H281DRAFT_02282 0.56 +1.4
427,865 - H281DRAFT_02282 0.56 -0.6
427,865 - H281DRAFT_02282 0.56 -0.3
427,866 + H281DRAFT_02282 0.56 +0.3
427,866 + H281DRAFT_02282 0.56 +2.5
428,108 + +0.5
428,109 - -1.4
428,109 - -0.5
428,152 - -0.4
428,186 + -0.4
428,203 - +1.0
428,222 + +0.3
428,222 + +0.4
428,222 + -0.5
428,223 - -0.6
428,223 - +0.5
428,272 + H281DRAFT_02283 0.12 +0.9
428,417 - H281DRAFT_02283 0.80 +0.1
428,417 - H281DRAFT_02283 0.80 +0.8
428,435 + H281DRAFT_02283 0.88 -0.9
428,435 + H281DRAFT_02283 0.88 +0.2
428,436 - H281DRAFT_02283 0.88 -1.2
428,466 + -0.1
428,474 + -0.1
428,527 + -0.3
428,608 + -0.1
428,609 - +1.3
428,641 + H281DRAFT_02284 0.15 +0.9
428,706 + H281DRAFT_02284 0.35 +2.3
428,706 + H281DRAFT_02284 0.35 +0.8
428,706 + H281DRAFT_02284 0.35 -0.1
428,832 - H281DRAFT_02284 0.73 +0.6
429,062 - H281DRAFT_02285 0.11 -0.2
429,089 + H281DRAFT_02285 0.13 +0.1
429,109 - H281DRAFT_02285 0.14 -1.2
429,213 - H281DRAFT_02285 0.22 +0.4
429,364 - H281DRAFT_02285 0.33 +0.6
429,380 - H281DRAFT_02285 0.34 +0.3
429,432 + H281DRAFT_02285 0.37 +0.9
429,433 - H281DRAFT_02285 0.38 +0.4
429,433 - H281DRAFT_02285 0.38 -0.2
429,433 - H281DRAFT_02285 0.38 +1.3
429,530 + H281DRAFT_02285 0.44 +0.5
429,530 + H281DRAFT_02285 0.44 +1.4
429,531 - H281DRAFT_02285 0.45 +0.7
429,531 - H281DRAFT_02285 0.45 -0.4
429,531 - H281DRAFT_02285 0.45 -0.2
429,531 - H281DRAFT_02285 0.45 -0.5
429,534 + H281DRAFT_02285 0.45 +0.7
429,535 - H281DRAFT_02285 0.45 -1.7
429,651 - H281DRAFT_02285 0.53 -0.5
429,652 + H281DRAFT_02285 0.53 -2.0
429,652 + H281DRAFT_02285 0.53 +0.3
429,652 + H281DRAFT_02285 0.53 +0.1
429,653 - H281DRAFT_02285 0.53 +0.5
429,653 - H281DRAFT_02285 0.53 -0.1
429,653 - H281DRAFT_02285 0.53 +0.6
429,653 - H281DRAFT_02285 0.53 +0.0
429,653 - H281DRAFT_02285 0.53 -1.4
429,653 - H281DRAFT_02285 0.53 +0.1
429,671 + H281DRAFT_02285 0.55 +1.2
429,677 + H281DRAFT_02285 0.55 +0.7
429,678 - H281DRAFT_02285 0.55 +0.7
429,678 - H281DRAFT_02285 0.55 -0.4
429,679 + H281DRAFT_02285 0.55 -1.6
429,679 + H281DRAFT_02285 0.55 -0.1
429,679 + H281DRAFT_02285 0.55 +0.8
429,680 - H281DRAFT_02285 0.55 +2.1
429,743 + H281DRAFT_02285 0.60 +1.3
429,743 + H281DRAFT_02285 0.60 -0.1
429,743 + H281DRAFT_02285 0.60 -0.9
429,743 + H281DRAFT_02285 0.60 -0.2
429,743 + H281DRAFT_02285 0.60 +0.3
429,744 - H281DRAFT_02285 0.60 +0.8
429,882 + H281DRAFT_02285 0.70 +0.1
429,883 - H281DRAFT_02285 0.70 -0.2
429,883 - H281DRAFT_02285 0.70 +0.6

Or see this region's nucleotide sequence