Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02135

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_02134 and H281DRAFT_02135 are separated by 192 nucleotidesH281DRAFT_02135 and H281DRAFT_02136 are separated by 126 nucleotidesH281DRAFT_02136 and H281DRAFT_02137 are separated by 4 nucleotides H281DRAFT_02134: H281DRAFT_02134 - hypothetical protein, at 272,468 to 273,343 _02134 H281DRAFT_02135: H281DRAFT_02135 - Protein of unknown function (DUF3892), at 273,536 to 273,835 _02135 H281DRAFT_02136: H281DRAFT_02136 - hypothetical protein, at 273,962 to 274,549 _02136 H281DRAFT_02137: H281DRAFT_02137 - type I restriction enzyme M protein, at 274,554 to 276,065 _02137 Position (kb) 273 274Strain fitness (log2 ratio) -3 -2 -1 0 1at 272.600 kb on + strand, within H281DRAFT_02134at 272.638 kb on - strandat 272.688 kb on + strand, within H281DRAFT_02134at 272.688 kb on + strand, within H281DRAFT_02134at 272.691 kb on + strand, within H281DRAFT_02134at 272.692 kb on - strand, within H281DRAFT_02134at 272.692 kb on - strand, within H281DRAFT_02134at 272.698 kb on + strand, within H281DRAFT_02134at 272.698 kb on + strand, within H281DRAFT_02134at 272.701 kb on - strand, within H281DRAFT_02134at 272.745 kb on + strand, within H281DRAFT_02134at 272.754 kb on + strand, within H281DRAFT_02134at 272.810 kb on + strand, within H281DRAFT_02134at 272.853 kb on + strand, within H281DRAFT_02134at 272.853 kb on + strand, within H281DRAFT_02134at 272.854 kb on - strand, within H281DRAFT_02134at 272.854 kb on - strand, within H281DRAFT_02134at 272.903 kb on - strand, within H281DRAFT_02134at 272.992 kb on - strand, within H281DRAFT_02134at 273.089 kb on + strand, within H281DRAFT_02134at 273.109 kb on + strand, within H281DRAFT_02134at 273.110 kb on - strand, within H281DRAFT_02134at 273.112 kb on - strand, within H281DRAFT_02134at 273.134 kb on - strand, within H281DRAFT_02134at 273.134 kb on - strand, within H281DRAFT_02134at 273.209 kb on + strand, within H281DRAFT_02134at 273.237 kb on - strand, within H281DRAFT_02134at 273.252 kb on + strand, within H281DRAFT_02134at 273.252 kb on + strand, within H281DRAFT_02134at 273.253 kb on - strand, within H281DRAFT_02134at 273.322 kb on + strandat 273.344 kb on - strandat 273.357 kb on + strandat 273.357 kb on + strandat 273.357 kb on + strandat 273.357 kb on + strandat 273.358 kb on - strandat 273.358 kb on - strandat 273.430 kb on + strandat 273.453 kb on - strandat 273.453 kb on - strandat 273.453 kb on - strandat 273.459 kb on + strandat 273.459 kb on + strandat 273.503 kb on + strandat 273.619 kb on - strand, within H281DRAFT_02135at 273.619 kb on - strand, within H281DRAFT_02135at 273.670 kb on + strand, within H281DRAFT_02135at 273.687 kb on + strand, within H281DRAFT_02135at 273.687 kb on + strand, within H281DRAFT_02135at 273.688 kb on - strand, within H281DRAFT_02135at 273.736 kb on + strand, within H281DRAFT_02135at 273.736 kb on + strand, within H281DRAFT_02135at 273.757 kb on + strand, within H281DRAFT_02135at 273.805 kb on + strand, within H281DRAFT_02135at 273.806 kb on - strandat 273.806 kb on - strandat 273.806 kb on - strandat 273.817 kb on + strandat 273.817 kb on + strandat 273.818 kb on - strandat 273.818 kb on - strandat 273.818 kb on - strandat 273.818 kb on - strandat 273.838 kb on + strandat 273.838 kb on + strandat 273.905 kb on + strandat 273.905 kb on + strandat 273.905 kb on + strandat 273.906 kb on - strandat 273.906 kb on - strandat 273.972 kb on + strandat 273.976 kb on - strandat 274.129 kb on + strandat 274.129 kb on + strand, within H281DRAFT_02136at 274.129 kb on + strand, within H281DRAFT_02136at 274.190 kb on + strand, within H281DRAFT_02136at 274.540 kb on + strandat 274.540 kb on + strandat 274.644 kb on + strandat 274.653 kb on + strandat 274.653 kb on + strandat 274.653 kb on + strandat 274.654 kb on - strandat 274.680 kb on + strandat 274.717 kb on - strand, within H281DRAFT_02137

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
remove
272,600 + H281DRAFT_02134 0.15 +0.1
272,638 - -0.3
272,688 + H281DRAFT_02134 0.25 +1.0
272,688 + H281DRAFT_02134 0.25 +0.7
272,691 + H281DRAFT_02134 0.25 -0.2
272,692 - H281DRAFT_02134 0.26 +0.8
272,692 - H281DRAFT_02134 0.26 +1.1
272,698 + H281DRAFT_02134 0.26 +1.2
272,698 + H281DRAFT_02134 0.26 +0.5
272,701 - H281DRAFT_02134 0.27 +0.3
272,745 + H281DRAFT_02134 0.32 -0.3
272,754 + H281DRAFT_02134 0.33 +0.9
272,810 + H281DRAFT_02134 0.39 +0.0
272,853 + H281DRAFT_02134 0.44 +0.5
272,853 + H281DRAFT_02134 0.44 -0.2
272,854 - H281DRAFT_02134 0.44 -0.5
272,854 - H281DRAFT_02134 0.44 +0.3
272,903 - H281DRAFT_02134 0.50 -0.3
272,992 - H281DRAFT_02134 0.60 +0.4
273,089 + H281DRAFT_02134 0.71 +0.1
273,109 + H281DRAFT_02134 0.73 +1.2
273,110 - H281DRAFT_02134 0.73 +0.2
273,112 - H281DRAFT_02134 0.74 +0.9
273,134 - H281DRAFT_02134 0.76 -0.3
273,134 - H281DRAFT_02134 0.76 +0.1
273,209 + H281DRAFT_02134 0.85 +0.2
273,237 - H281DRAFT_02134 0.88 +0.5
273,252 + H281DRAFT_02134 0.89 -1.2
273,252 + H281DRAFT_02134 0.89 -0.9
273,253 - H281DRAFT_02134 0.90 -0.9
273,322 + +0.1
273,344 - +0.2
273,357 + -0.1
273,357 + -3.2
273,357 + -0.8
273,357 + -0.7
273,358 - +0.2
273,358 - -0.3
273,430 + -0.6
273,453 - +0.6
273,453 - -0.2
273,453 - +0.9
273,459 + -0.3
273,459 + +0.4
273,503 + +0.8
273,619 - H281DRAFT_02135 0.28 +0.1
273,619 - H281DRAFT_02135 0.28 +1.5
273,670 + H281DRAFT_02135 0.45 -1.0
273,687 + H281DRAFT_02135 0.50 -0.2
273,687 + H281DRAFT_02135 0.50 -0.6
273,688 - H281DRAFT_02135 0.51 +0.2
273,736 + H281DRAFT_02135 0.67 +0.5
273,736 + H281DRAFT_02135 0.67 +0.2
273,757 + H281DRAFT_02135 0.74 +0.3
273,805 + H281DRAFT_02135 0.90 -1.1
273,806 - +0.0
273,806 - -0.3
273,806 - +0.2
273,817 + +1.4
273,817 + -0.3
273,818 - +0.3
273,818 - +0.1
273,818 - -0.1
273,818 - -0.7
273,838 + +1.0
273,838 + +0.0
273,905 + +1.5
273,905 + +0.0
273,905 + +0.7
273,906 - +1.2
273,906 - -0.1
273,972 + +0.4
273,976 - -1.0
274,129 + -0.8
274,129 + H281DRAFT_02136 0.28 -1.5
274,129 + H281DRAFT_02136 0.28 +0.0
274,190 + H281DRAFT_02136 0.39 -1.0
274,540 + +1.0
274,540 + +0.7
274,644 + -1.3
274,653 + -0.3
274,653 + +0.2
274,653 + +0.2
274,654 - +1.2
274,680 + -1.0
274,717 - H281DRAFT_02137 0.11 -2.1

Or see this region's nucleotide sequence