Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_02113

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_02112 and H281DRAFT_02113 are separated by 579 nucleotidesH281DRAFT_02113 and H281DRAFT_02114 are separated by 569 nucleotides H281DRAFT_02112: H281DRAFT_02112 - Outer membrane protein (porin), at 239,889 to 240,974 _02112 H281DRAFT_02113: H281DRAFT_02113 - hypothetical protein, at 241,554 to 242,009 _02113 H281DRAFT_02114: H281DRAFT_02114 - solute carrier family 10 (sodium/bile acid cotransporter), member 7, at 242,579 to 243,604 _02114 Position (kb) 241 242 243Strain fitness (log2 ratio) -3 -2 -1 0 1at 240.643 kb on + strand, within H281DRAFT_02112at 240.686 kb on - strand, within H281DRAFT_02112at 240.722 kb on + strand, within H281DRAFT_02112at 240.723 kb on - strand, within H281DRAFT_02112at 240.776 kb on - strand, within H281DRAFT_02112at 240.776 kb on - strand, within H281DRAFT_02112at 240.865 kb on + strand, within H281DRAFT_02112at 240.936 kb on - strandat 240.936 kb on - strandat 241.099 kb on + strandat 241.099 kb on + strandat 241.099 kb on + strandat 241.099 kb on + strandat 241.112 kb on - strandat 241.130 kb on + strandat 241.130 kb on + strandat 241.130 kb on + strandat 241.145 kb on - strandat 241.168 kb on + strandat 241.168 kb on + strandat 241.168 kb on + strandat 241.295 kb on - strandat 241.395 kb on + strandat 241.402 kb on + strandat 241.415 kb on - strandat 241.440 kb on - strandat 241.526 kb on + strandat 241.526 kb on + strandat 241.555 kb on + strandat 241.556 kb on - strandat 241.556 kb on - strandat 241.556 kb on - strandat 241.637 kb on + strand, within H281DRAFT_02113at 241.639 kb on + strand, within H281DRAFT_02113at 241.639 kb on + strand, within H281DRAFT_02113at 241.744 kb on + strand, within H281DRAFT_02113at 241.744 kb on + strand, within H281DRAFT_02113at 241.745 kb on - strand, within H281DRAFT_02113at 241.745 kb on - strand, within H281DRAFT_02113at 241.745 kb on - strand, within H281DRAFT_02113at 241.871 kb on - strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.885 kb on + strand, within H281DRAFT_02113at 241.886 kb on - strand, within H281DRAFT_02113at 241.886 kb on - strand, within H281DRAFT_02113at 242.136 kb on + strandat 242.141 kb on + strandat 242.142 kb on - strandat 242.142 kb on - strandat 242.178 kb on + strandat 242.198 kb on - strandat 242.198 kb on - strandat 242.241 kb on + strandat 242.241 kb on + strandat 242.253 kb on - strandat 242.264 kb on + strandat 242.330 kb on + strandat 242.330 kb on + strandat 242.334 kb on + strandat 242.334 kb on + strandat 242.334 kb on + strandat 242.334 kb on + strandat 242.334 kb on + strandat 242.335 kb on - strandat 242.335 kb on - strandat 242.335 kb on - strandat 242.335 kb on - strandat 242.638 kb on - strandat 242.725 kb on - strand, within H281DRAFT_02114at 242.725 kb on - strand, within H281DRAFT_02114

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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240,643 + H281DRAFT_02112 0.69 -0.6
240,686 - H281DRAFT_02112 0.73 +1.5
240,722 + H281DRAFT_02112 0.77 -0.3
240,723 - H281DRAFT_02112 0.77 +1.0
240,776 - H281DRAFT_02112 0.82 +0.9
240,776 - H281DRAFT_02112 0.82 +1.0
240,865 + H281DRAFT_02112 0.90 +1.4
240,936 - +1.5
240,936 - -0.2
241,099 + -0.7
241,099 + -0.1
241,099 + +0.3
241,099 + +0.1
241,112 - +1.2
241,130 + -0.8
241,130 + +0.2
241,130 + +0.4
241,145 - -2.2
241,168 + -0.5
241,168 + -0.0
241,168 + -0.0
241,295 - -2.3
241,395 + +1.0
241,402 + +0.6
241,415 - -1.1
241,440 - -1.5
241,526 + +0.3
241,526 + -1.4
241,555 + +0.4
241,556 - -0.9
241,556 - -1.6
241,556 - +0.1
241,637 + H281DRAFT_02113 0.18 +0.5
241,639 + H281DRAFT_02113 0.19 -1.3
241,639 + H281DRAFT_02113 0.19 +0.3
241,744 + H281DRAFT_02113 0.42 +0.3
241,744 + H281DRAFT_02113 0.42 +0.5
241,745 - H281DRAFT_02113 0.42 -1.3
241,745 - H281DRAFT_02113 0.42 -0.1
241,745 - H281DRAFT_02113 0.42 -0.3
241,871 - H281DRAFT_02113 0.70 +1.0
241,885 + H281DRAFT_02113 0.73 +0.4
241,885 + H281DRAFT_02113 0.73 +0.5
241,885 + H281DRAFT_02113 0.73 +0.1
241,885 + H281DRAFT_02113 0.73 -0.1
241,885 + H281DRAFT_02113 0.73 +0.0
241,885 + H281DRAFT_02113 0.73 +0.3
241,886 - H281DRAFT_02113 0.73 -0.1
241,886 - H281DRAFT_02113 0.73 -1.1
242,136 + +0.5
242,141 + -3.1
242,142 - -0.0
242,142 - -1.1
242,178 + +1.3
242,198 - -0.6
242,198 - -0.9
242,241 + +1.2
242,241 + +0.2
242,253 - -0.3
242,264 + +0.7
242,330 + -0.1
242,330 + -0.1
242,334 + +0.0
242,334 + +0.5
242,334 + -0.4
242,334 + -0.2
242,334 + -0.8
242,335 - -0.6
242,335 - -1.5
242,335 - -0.1
242,335 - -0.1
242,638 - -0.8
242,725 - H281DRAFT_02114 0.14 +0.0
242,725 - H281DRAFT_02114 0.14 -1.2

Or see this region's nucleotide sequence