Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01914

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01913 and H281DRAFT_01914 are separated by 33 nucleotidesH281DRAFT_01914 and H281DRAFT_01915 are separated by 58 nucleotides H281DRAFT_01913: H281DRAFT_01913 - Excinuclease ABC subunit A, at 27,057 to 29,930 _01913 H281DRAFT_01914: H281DRAFT_01914 - Predicted PurR-regulated permease PerM, at 29,964 to 31,049 _01914 H281DRAFT_01915: H281DRAFT_01915 - iron complex outermembrane recepter protein, at 31,108 to 33,231 _01915 Position (kb) 29 30 31 32Strain fitness (log2 ratio) -2 -1 0 1 2 3at 28.994 kb on + strand, within H281DRAFT_01913at 28.994 kb on + strand, within H281DRAFT_01913at 28.994 kb on + strand, within H281DRAFT_01913at 28.994 kb on + strand, within H281DRAFT_01913at 28.995 kb on - strand, within H281DRAFT_01913at 28.995 kb on - strand, within H281DRAFT_01913at 28.995 kb on - strand, within H281DRAFT_01913at 28.995 kb on - strand, within H281DRAFT_01913at 29.052 kb on + strand, within H281DRAFT_01913at 29.053 kb on - strand, within H281DRAFT_01913at 29.077 kb on - strand, within H281DRAFT_01913at 29.077 kb on - strand, within H281DRAFT_01913at 29.104 kb on - strand, within H281DRAFT_01913at 29.196 kb on + strand, within H281DRAFT_01913at 29.196 kb on + strand, within H281DRAFT_01913at 29.196 kb on + strand, within H281DRAFT_01913at 29.197 kb on - strand, within H281DRAFT_01913at 29.197 kb on - strand, within H281DRAFT_01913at 29.197 kb on - strand, within H281DRAFT_01913at 29.198 kb on + strand, within H281DRAFT_01913at 29.199 kb on - strand, within H281DRAFT_01913at 29.199 kb on - strand, within H281DRAFT_01913at 29.199 kb on - strand, within H281DRAFT_01913at 29.199 kb on - strand, within H281DRAFT_01913at 29.227 kb on + strand, within H281DRAFT_01913at 29.228 kb on - strand, within H281DRAFT_01913at 29.332 kb on + strand, within H281DRAFT_01913at 29.333 kb on - strand, within H281DRAFT_01913at 29.333 kb on - strand, within H281DRAFT_01913at 29.333 kb on - strand, within H281DRAFT_01913at 29.364 kb on + strand, within H281DRAFT_01913at 29.364 kb on + strand, within H281DRAFT_01913at 29.364 kb on + strand, within H281DRAFT_01913at 29.364 kb on + strand, within H281DRAFT_01913at 29.365 kb on - strand, within H281DRAFT_01913at 29.397 kb on + strand, within H281DRAFT_01913at 29.398 kb on - strand, within H281DRAFT_01913at 29.398 kb on - strand, within H281DRAFT_01913at 29.424 kb on + strand, within H281DRAFT_01913at 29.425 kb on - strand, within H281DRAFT_01913at 29.425 kb on - strand, within H281DRAFT_01913at 29.425 kb on - strand, within H281DRAFT_01913at 29.475 kb on + strand, within H281DRAFT_01913at 29.545 kb on - strand, within H281DRAFT_01913at 29.606 kb on - strand, within H281DRAFT_01913at 29.606 kb on - strand, within H281DRAFT_01913at 29.644 kb on + strandat 29.645 kb on - strandat 29.645 kb on - strandat 29.645 kb on - strandat 29.646 kb on + strandat 29.646 kb on + strandat 29.646 kb on + strandat 29.647 kb on - strandat 29.647 kb on - strandat 29.708 kb on + strandat 29.708 kb on + strandat 29.709 kb on - strandat 29.733 kb on - strandat 29.736 kb on - strandat 29.736 kb on - strandat 29.768 kb on - strandat 29.771 kb on + strandat 29.771 kb on + strandat 29.771 kb on + strandat 29.772 kb on - strandat 29.885 kb on + strandat 29.889 kb on + strandat 29.889 kb on + strandat 29.889 kb on + strandat 29.889 kb on + strandat 29.922 kb on - strandat 29.928 kb on + strandat 30.010 kb on + strandat 30.011 kb on - strandat 30.011 kb on - strandat 30.081 kb on + strand, within H281DRAFT_01914at 30.081 kb on + strand, within H281DRAFT_01914at 30.173 kb on + strand, within H281DRAFT_01914at 30.174 kb on - strand, within H281DRAFT_01914at 30.174 kb on - strand, within H281DRAFT_01914at 30.174 kb on - strand, within H281DRAFT_01914at 30.200 kb on + strand, within H281DRAFT_01914at 30.200 kb on + strand, within H281DRAFT_01914at 30.200 kb on + strand, within H281DRAFT_01914at 30.201 kb on - strand, within H281DRAFT_01914at 30.201 kb on - strand, within H281DRAFT_01914at 30.631 kb on + strand, within H281DRAFT_01914at 30.883 kb on - strand, within H281DRAFT_01914at 31.011 kb on + strandat 31.012 kb on - strandat 31.012 kb on - strandat 31.058 kb on + strandat 31.058 kb on + strandat 31.109 kb on + strandat 31.110 kb on - strandat 31.110 kb on - strandat 31.110 kb on - strandat 31.173 kb on - strandat 31.178 kb on + strandat 31.256 kb on + strandat 31.370 kb on + strand, within H281DRAFT_01915at 31.371 kb on - strand, within H281DRAFT_01915at 31.383 kb on - strand, within H281DRAFT_01915at 31.457 kb on + strand, within H281DRAFT_01915at 31.564 kb on - strand, within H281DRAFT_01915at 31.564 kb on - strand, within H281DRAFT_01915at 31.564 kb on - strand, within H281DRAFT_01915at 31.566 kb on - strand, within H281DRAFT_01915at 31.566 kb on - strand, within H281DRAFT_01915at 31.710 kb on - strandat 31.751 kb on + strand, within H281DRAFT_01915at 31.760 kb on + strand, within H281DRAFT_01915at 31.830 kb on - strand, within H281DRAFT_01915at 31.875 kb on - strand, within H281DRAFT_01915at 31.875 kb on - strand, within H281DRAFT_01915at 31.979 kb on + strand, within H281DRAFT_01915at 31.979 kb on + strand, within H281DRAFT_01915at 31.979 kb on + strand, within H281DRAFT_01915at 31.980 kb on - strand, within H281DRAFT_01915at 31.982 kb on + strand, within H281DRAFT_01915at 31.983 kb on - strand, within H281DRAFT_01915at 31.983 kb on - strand, within H281DRAFT_01915at 32.021 kb on + strand, within H281DRAFT_01915at 32.021 kb on + strand, within H281DRAFT_01915at 32.021 kb on + strand, within H281DRAFT_01915at 32.022 kb on - strand, within H281DRAFT_01915at 32.022 kb on - strand, within H281DRAFT_01915at 32.022 kb on - strand, within H281DRAFT_01915

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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28,994 + H281DRAFT_01913 0.67 -0.2
28,994 + H281DRAFT_01913 0.67 +0.3
28,994 + H281DRAFT_01913 0.67 +0.5
28,994 + H281DRAFT_01913 0.67 +0.4
28,995 - H281DRAFT_01913 0.67 +0.7
28,995 - H281DRAFT_01913 0.67 +2.0
28,995 - H281DRAFT_01913 0.67 +1.1
28,995 - H281DRAFT_01913 0.67 +1.8
29,052 + H281DRAFT_01913 0.69 +0.2
29,053 - H281DRAFT_01913 0.69 -0.7
29,077 - H281DRAFT_01913 0.70 -0.6
29,077 - H281DRAFT_01913 0.70 +0.5
29,104 - H281DRAFT_01913 0.71 +0.7
29,196 + H281DRAFT_01913 0.74 +0.2
29,196 + H281DRAFT_01913 0.74 +0.3
29,196 + H281DRAFT_01913 0.74 +0.7
29,197 - H281DRAFT_01913 0.74 -1.0
29,197 - H281DRAFT_01913 0.74 +0.5
29,197 - H281DRAFT_01913 0.74 +0.6
29,198 + H281DRAFT_01913 0.74 +0.2
29,199 - H281DRAFT_01913 0.75 +1.8
29,199 - H281DRAFT_01913 0.75 -0.1
29,199 - H281DRAFT_01913 0.75 -1.4
29,199 - H281DRAFT_01913 0.75 +0.8
29,227 + H281DRAFT_01913 0.76 -0.2
29,228 - H281DRAFT_01913 0.76 +0.2
29,332 + H281DRAFT_01913 0.79 +0.1
29,333 - H281DRAFT_01913 0.79 +1.7
29,333 - H281DRAFT_01913 0.79 -0.5
29,333 - H281DRAFT_01913 0.79 +1.2
29,364 + H281DRAFT_01913 0.80 +0.6
29,364 + H281DRAFT_01913 0.80 -1.9
29,364 + H281DRAFT_01913 0.80 +0.2
29,364 + H281DRAFT_01913 0.80 +0.5
29,365 - H281DRAFT_01913 0.80 +0.3
29,397 + H281DRAFT_01913 0.81 -0.8
29,398 - H281DRAFT_01913 0.81 +1.5
29,398 - H281DRAFT_01913 0.81 +0.8
29,424 + H281DRAFT_01913 0.82 +0.3
29,425 - H281DRAFT_01913 0.82 +0.7
29,425 - H281DRAFT_01913 0.82 +0.4
29,425 - H281DRAFT_01913 0.82 +0.4
29,475 + H281DRAFT_01913 0.84 +0.2
29,545 - H281DRAFT_01913 0.87 +1.2
29,606 - H281DRAFT_01913 0.89 +0.5
29,606 - H281DRAFT_01913 0.89 +0.5
29,644 + -0.7
29,645 - +1.2
29,645 - +1.0
29,645 - +0.8
29,646 + -0.6
29,646 + +0.9
29,646 + -1.9
29,647 - +1.7
29,647 - +0.8
29,708 + +0.0
29,708 + +0.7
29,709 - +1.9
29,733 - +1.4
29,736 - +0.3
29,736 - +1.6
29,768 - +1.6
29,771 + -1.5
29,771 + -0.5
29,771 + +0.6
29,772 - +1.2
29,885 + -0.0
29,889 + -0.4
29,889 + +0.5
29,889 + -0.8
29,889 + +0.9
29,922 - +1.9
29,928 + +1.5
30,010 + +2.9
30,011 - +1.4
30,011 - +2.2
30,081 + H281DRAFT_01914 0.11 +0.7
30,081 + H281DRAFT_01914 0.11 +1.2
30,173 + H281DRAFT_01914 0.19 +1.4
30,174 - H281DRAFT_01914 0.19 +0.8
30,174 - H281DRAFT_01914 0.19 +0.9
30,174 - H281DRAFT_01914 0.19 +2.4
30,200 + H281DRAFT_01914 0.22 +1.8
30,200 + H281DRAFT_01914 0.22 +1.2
30,200 + H281DRAFT_01914 0.22 +1.7
30,201 - H281DRAFT_01914 0.22 +2.2
30,201 - H281DRAFT_01914 0.22 +3.1
30,631 + H281DRAFT_01914 0.61 +1.4
30,883 - H281DRAFT_01914 0.85 +1.1
31,011 + +2.1
31,012 - +0.8
31,012 - +0.5
31,058 + +0.4
31,058 + -1.2
31,109 + -0.2
31,110 - +0.4
31,110 - -0.3
31,110 - +2.4
31,173 - +0.0
31,178 + +0.9
31,256 + -0.4
31,370 + H281DRAFT_01915 0.12 -0.3
31,371 - H281DRAFT_01915 0.12 -0.5
31,383 - H281DRAFT_01915 0.13 +0.2
31,457 + H281DRAFT_01915 0.16 -0.7
31,564 - H281DRAFT_01915 0.21 +0.4
31,564 - H281DRAFT_01915 0.21 +0.2
31,564 - H281DRAFT_01915 0.21 -1.3
31,566 - H281DRAFT_01915 0.22 -0.3
31,566 - H281DRAFT_01915 0.22 +0.6
31,710 - +2.8
31,751 + H281DRAFT_01915 0.30 +0.4
31,760 + H281DRAFT_01915 0.31 -0.6
31,830 - H281DRAFT_01915 0.34 -0.4
31,875 - H281DRAFT_01915 0.36 -0.1
31,875 - H281DRAFT_01915 0.36 -0.2
31,979 + H281DRAFT_01915 0.41 -0.2
31,979 + H281DRAFT_01915 0.41 -0.7
31,979 + H281DRAFT_01915 0.41 +0.5
31,980 - H281DRAFT_01915 0.41 +0.4
31,982 + H281DRAFT_01915 0.41 -0.1
31,983 - H281DRAFT_01915 0.41 -0.1
31,983 - H281DRAFT_01915 0.41 +0.1
32,021 + H281DRAFT_01915 0.43 +0.5
32,021 + H281DRAFT_01915 0.43 +2.8
32,021 + H281DRAFT_01915 0.43 +0.2
32,022 - H281DRAFT_01915 0.43 +0.3
32,022 - H281DRAFT_01915 0.43 +0.9
32,022 - H281DRAFT_01915 0.43 +0.0

Or see this region's nucleotide sequence