Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01900

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01897 and H281DRAFT_01898 are separated by 131 nucleotidesH281DRAFT_01898 and H281DRAFT_01899 are separated by 117 nucleotidesH281DRAFT_01899 and H281DRAFT_01900 are separated by 115 nucleotidesH281DRAFT_01900 and H281DRAFT_01901 are separated by 247 nucleotides H281DRAFT_01897: H281DRAFT_01897 - Acetyl esterase/lipase, at 10,102 to 11,064 _01897 H281DRAFT_01898: H281DRAFT_01898 - CHRD domain-containing protein, at 11,196 to 11,630 _01898 H281DRAFT_01899: H281DRAFT_01899 - hypothetical protein, at 11,748 to 11,867 _01899 H281DRAFT_01900: H281DRAFT_01900 - Response regulators consisting of a CheY-like receiver domain and a winged-helix DNA-binding domain, at 11,983 to 13,323 _01900 H281DRAFT_01901: H281DRAFT_01901 - Sugar phosphate permease, at 13,571 to 15,094 _01901 Position (kb) 11 12 13 14Strain fitness (log2 ratio) -2 -1 0 1 2at 11.099 kb on + strandat 11.099 kb on + strandat 11.099 kb on + strandat 11.099 kb on + strandat 11.100 kb on - strandat 11.100 kb on - strandat 11.197 kb on + strandat 11.197 kb on + strandat 11.198 kb on - strandat 11.198 kb on - strandat 11.198 kb on - strandat 11.249 kb on + strandat 11.263 kb on + strand, within H281DRAFT_01898at 11.263 kb on + strandat 11.264 kb on - strand, within H281DRAFT_01898at 11.289 kb on + strand, within H281DRAFT_01898at 11.434 kb on + strand, within H281DRAFT_01898at 11.434 kb on + strand, within H281DRAFT_01898at 11.434 kb on + strand, within H281DRAFT_01898at 11.434 kb on + strand, within H281DRAFT_01898at 11.435 kb on - strand, within H281DRAFT_01898at 11.505 kb on + strand, within H281DRAFT_01898at 11.506 kb on - strand, within H281DRAFT_01898at 11.506 kb on - strand, within H281DRAFT_01898at 11.506 kb on - strand, within H281DRAFT_01898at 11.548 kb on - strand, within H281DRAFT_01898at 11.624 kb on + strandat 11.644 kb on + strandat 11.692 kb on + strandat 11.692 kb on + strandat 11.692 kb on + strandat 11.692 kb on + strandat 11.693 kb on - strandat 11.693 kb on - strandat 11.693 kb on - strandat 11.693 kb on - strandat 11.693 kb on - strandat 11.695 kb on + strandat 11.695 kb on + strandat 11.695 kb on + strandat 11.696 kb on - strandat 11.696 kb on - strandat 11.696 kb on - strandat 11.696 kb on - strandat 11.696 kb on - strandat 11.741 kb on + strandat 11.742 kb on - strandat 11.775 kb on - strand, within H281DRAFT_01899at 11.793 kb on + strand, within H281DRAFT_01899at 11.834 kb on + strand, within H281DRAFT_01899at 11.835 kb on - strand, within H281DRAFT_01899at 11.835 kb on - strand, within H281DRAFT_01899at 12.057 kb on + strandat 12.087 kb on + strandat 12.373 kb on - strand, within H281DRAFT_01900at 12.373 kb on - strand, within H281DRAFT_01900at 12.425 kb on + strand, within H281DRAFT_01900at 12.597 kb on - strand, within H281DRAFT_01900at 12.604 kb on + strand, within H281DRAFT_01900at 12.604 kb on + strand, within H281DRAFT_01900at 12.605 kb on - strand, within H281DRAFT_01900at 12.605 kb on - strand, within H281DRAFT_01900at 12.605 kb on - strand, within H281DRAFT_01900at 12.615 kb on + strand, within H281DRAFT_01900at 12.615 kb on + strand, within H281DRAFT_01900at 12.616 kb on - strand, within H281DRAFT_01900at 12.616 kb on - strand, within H281DRAFT_01900at 12.641 kb on + strand, within H281DRAFT_01900at 12.641 kb on + strand, within H281DRAFT_01900at 12.642 kb on - strand, within H281DRAFT_01900at 12.982 kb on + strand, within H281DRAFT_01900at 13.167 kb on + strand, within H281DRAFT_01900at 13.167 kb on + strand, within H281DRAFT_01900at 13.167 kb on + strand, within H281DRAFT_01900at 13.168 kb on - strand, within H281DRAFT_01900at 13.168 kb on - strand, within H281DRAFT_01900at 13.168 kb on - strand, within H281DRAFT_01900at 13.173 kb on + strand, within H281DRAFT_01900at 13.248 kb on + strandat 13.254 kb on + strandat 13.265 kb on + strandat 13.265 kb on + strandat 13.266 kb on - strandat 13.266 kb on - strandat 13.317 kb on + strandat 13.318 kb on - strandat 13.342 kb on + strandat 13.342 kb on + strandat 13.343 kb on - strandat 13.343 kb on - strandat 13.362 kb on + strandat 13.505 kb on - strandat 13.505 kb on - strandat 13.698 kb on - strandat 13.750 kb on + strand, within H281DRAFT_01901at 13.750 kb on + strand, within H281DRAFT_01901at 13.750 kb on + strand, within H281DRAFT_01901at 13.751 kb on - strand, within H281DRAFT_01901at 13.751 kb on - strand, within H281DRAFT_01901at 13.977 kb on + strand, within H281DRAFT_01901at 13.978 kb on - strand, within H281DRAFT_01901at 13.978 kb on - strand, within H281DRAFT_01901at 14.169 kb on - strand, within H281DRAFT_01901at 14.225 kb on - strand, within H281DRAFT_01901

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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11,099 + +0.3
11,099 + -0.1
11,099 + +0.5
11,099 + -0.4
11,100 - +0.6
11,100 - +0.1
11,197 + +0.0
11,197 + -1.2
11,198 - +1.7
11,198 - -0.3
11,198 - +1.0
11,249 + +1.6
11,263 + H281DRAFT_01898 0.15 -0.1
11,263 + +1.9
11,264 - H281DRAFT_01898 0.16 +0.1
11,289 + H281DRAFT_01898 0.21 +1.8
11,434 + H281DRAFT_01898 0.55 +1.2
11,434 + H281DRAFT_01898 0.55 -0.0
11,434 + H281DRAFT_01898 0.55 +0.5
11,434 + H281DRAFT_01898 0.55 +0.1
11,435 - H281DRAFT_01898 0.55 +0.5
11,505 + H281DRAFT_01898 0.71 +0.6
11,506 - H281DRAFT_01898 0.71 -1.0
11,506 - H281DRAFT_01898 0.71 -1.4
11,506 - H281DRAFT_01898 0.71 +0.7
11,548 - H281DRAFT_01898 0.81 -0.2
11,624 + +0.7
11,644 + +0.1
11,692 + -0.4
11,692 + +0.2
11,692 + +1.3
11,692 + +0.9
11,693 - -0.1
11,693 - -0.9
11,693 - +0.5
11,693 - +0.2
11,693 - +0.3
11,695 + +0.7
11,695 + -0.1
11,695 + -0.2
11,696 - -0.6
11,696 - -1.0
11,696 - +2.2
11,696 - +0.7
11,696 - -0.1
11,741 + +1.2
11,742 - +1.0
11,775 - H281DRAFT_01899 0.23 -0.1
11,793 + H281DRAFT_01899 0.38 +0.4
11,834 + H281DRAFT_01899 0.72 +0.3
11,835 - H281DRAFT_01899 0.72 +0.6
11,835 - H281DRAFT_01899 0.72 -0.2
12,057 + +0.2
12,087 + +0.7
12,373 - H281DRAFT_01900 0.29 +1.0
12,373 - H281DRAFT_01900 0.29 +0.6
12,425 + H281DRAFT_01900 0.33 +0.3
12,597 - H281DRAFT_01900 0.46 -0.3
12,604 + H281DRAFT_01900 0.46 -0.3
12,604 + H281DRAFT_01900 0.46 +0.6
12,605 - H281DRAFT_01900 0.46 +0.8
12,605 - H281DRAFT_01900 0.46 +0.5
12,605 - H281DRAFT_01900 0.46 -1.0
12,615 + H281DRAFT_01900 0.47 +0.1
12,615 + H281DRAFT_01900 0.47 +0.5
12,616 - H281DRAFT_01900 0.47 +1.2
12,616 - H281DRAFT_01900 0.47 +1.6
12,641 + H281DRAFT_01900 0.49 +0.0
12,641 + H281DRAFT_01900 0.49 +0.6
12,642 - H281DRAFT_01900 0.49 +0.0
12,982 + H281DRAFT_01900 0.74 +0.8
13,167 + H281DRAFT_01900 0.88 +0.2
13,167 + H281DRAFT_01900 0.88 +0.2
13,167 + H281DRAFT_01900 0.88 -0.2
13,168 - H281DRAFT_01900 0.88 +0.1
13,168 - H281DRAFT_01900 0.88 +1.0
13,168 - H281DRAFT_01900 0.88 -0.1
13,173 + H281DRAFT_01900 0.89 -1.2
13,248 + +0.6
13,254 + +1.5
13,265 + -0.7
13,265 + +0.2
13,266 - -0.3
13,266 - -0.4
13,317 + -0.4
13,318 - +0.9
13,342 + +0.2
13,342 + -0.3
13,343 - +0.2
13,343 - +1.2
13,362 + +1.2
13,505 - +0.3
13,505 - +0.1
13,698 - +0.6
13,750 + H281DRAFT_01901 0.12 +0.0
13,750 + H281DRAFT_01901 0.12 +0.0
13,750 + H281DRAFT_01901 0.12 -1.8
13,751 - H281DRAFT_01901 0.12 +0.4
13,751 - H281DRAFT_01901 0.12 -0.3
13,977 + H281DRAFT_01901 0.27 -0.0
13,978 - H281DRAFT_01901 0.27 +0.3
13,978 - H281DRAFT_01901 0.27 +0.9
14,169 - H281DRAFT_01901 0.39 +0.7
14,225 - H281DRAFT_01901 0.43 +1.0

Or see this region's nucleotide sequence