Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01632

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01631 and H281DRAFT_01632 are separated by 530 nucleotidesH281DRAFT_01632 and H281DRAFT_01633 overlap by 17 nucleotidesH281DRAFT_01633 and H281DRAFT_01634 are separated by 46 nucleotides H281DRAFT_01631: H281DRAFT_01631 - Dihydrodipicolinate synthase/N-acetylneuraminate lyase, at 510,622 to 511,563 _01631 H281DRAFT_01632: H281DRAFT_01632 - LuxR family transcriptional regulator, quorum-sensing transcription factor LasR, at 512,094 to 512,822 _01632 H281DRAFT_01633: H281DRAFT_01633 - hypothetical protein, at 512,806 to 513,231 _01633 H281DRAFT_01634: H281DRAFT_01634 - acyl homoserine lactone synthase, at 513,278 to 513,871 _01634 Position (kb) 512 513Strain fitness (log2 ratio) -1 0 1 2 3at 511.127 kb on + strand, within H281DRAFT_01631at 511.128 kb on - strand, within H281DRAFT_01631at 511.128 kb on - strand, within H281DRAFT_01631at 511.128 kb on - strand, within H281DRAFT_01631at 511.145 kb on + strand, within H281DRAFT_01631at 511.146 kb on - strand, within H281DRAFT_01631at 511.215 kb on + strand, within H281DRAFT_01631at 511.444 kb on - strand, within H281DRAFT_01631at 511.564 kb on - strandat 511.586 kb on + strandat 511.704 kb on - strandat 511.766 kb on - strandat 511.828 kb on - strandat 511.893 kb on + strandat 511.905 kb on + strandat 511.905 kb on + strandat 511.906 kb on - strandat 511.906 kb on - strandat 511.958 kb on - strandat 511.958 kb on - strandat 511.969 kb on - strandat 512.011 kb on - strandat 512.025 kb on - strandat 512.102 kb on - strandat 512.109 kb on - strandat 512.128 kb on + strandat 512.128 kb on + strandat 512.251 kb on - strand, within H281DRAFT_01632at 512.251 kb on - strand, within H281DRAFT_01632at 512.251 kb on - strand, within H281DRAFT_01632at 512.251 kb on - strand, within H281DRAFT_01632at 512.251 kb on - strand, within H281DRAFT_01632at 512.251 kb on - strand, within H281DRAFT_01632at 512.265 kb on + strandat 512.266 kb on - strand, within H281DRAFT_01632at 512.266 kb on - strand, within H281DRAFT_01632at 512.266 kb on - strand, within H281DRAFT_01632at 512.266 kb on - strand, within H281DRAFT_01632at 512.289 kb on + strand, within H281DRAFT_01632at 512.290 kb on - strand, within H281DRAFT_01632at 512.312 kb on + strand, within H281DRAFT_01632at 512.314 kb on + strand, within H281DRAFT_01632at 512.314 kb on + strand, within H281DRAFT_01632at 512.314 kb on + strand, within H281DRAFT_01632at 512.315 kb on - strand, within H281DRAFT_01632at 512.315 kb on - strand, within H281DRAFT_01632at 512.403 kb on + strand, within H281DRAFT_01632at 512.403 kb on + strand, within H281DRAFT_01632at 512.403 kb on + strand, within H281DRAFT_01632at 512.403 kb on + strand, within H281DRAFT_01632at 512.404 kb on - strand, within H281DRAFT_01632at 512.540 kb on - strand, within H281DRAFT_01632at 512.540 kb on - strand, within H281DRAFT_01632at 512.557 kb on + strand, within H281DRAFT_01632at 512.557 kb on + strand, within H281DRAFT_01632at 512.807 kb on + strandat 512.807 kb on + strandat 512.808 kb on - strandat 512.808 kb on - strandat 512.901 kb on - strand, within H281DRAFT_01633at 513.179 kb on + strand, within H281DRAFT_01633at 513.193 kb on + strandat 513.193 kb on + strandat 513.194 kb on - strandat 513.194 kb on - strandat 513.205 kb on + strandat 513.205 kb on + strandat 513.205 kb on + strandat 513.205 kb on + strandat 513.205 kb on - strandat 513.206 kb on - strandat 513.206 kb on - strandat 513.206 kb on - strandat 513.206 kb on - strandat 513.341 kb on + strand, within H281DRAFT_01634at 513.341 kb on + strand, within H281DRAFT_01634at 513.341 kb on + strand, within H281DRAFT_01634at 513.342 kb on - strand, within H281DRAFT_01634at 513.342 kb on - strand, within H281DRAFT_01634at 513.386 kb on - strand, within H281DRAFT_01634at 513.419 kb on + strand, within H281DRAFT_01634at 513.419 kb on + strand, within H281DRAFT_01634at 513.420 kb on - strand, within H281DRAFT_01634at 513.440 kb on + strand, within H281DRAFT_01634at 513.440 kb on + strand, within H281DRAFT_01634at 513.440 kb on + strand, within H281DRAFT_01634at 513.440 kb on + strand, within H281DRAFT_01634at 513.440 kb on + strand, within H281DRAFT_01634at 513.441 kb on - strand, within H281DRAFT_01634at 513.441 kb on - strand, within H281DRAFT_01634at 513.441 kb on - strand, within H281DRAFT_01634at 513.441 kb on - strand, within H281DRAFT_01634at 513.441 kb on - strand, within H281DRAFT_01634at 513.571 kb on + strand, within H281DRAFT_01634at 513.572 kb on - strand, within H281DRAFT_01634at 513.698 kb on + strand, within H281DRAFT_01634at 513.698 kb on + strand, within H281DRAFT_01634at 513.698 kb on + strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.699 kb on - strand, within H281DRAFT_01634at 513.756 kb on + strand, within H281DRAFT_01634at 513.756 kb on + strand, within H281DRAFT_01634at 513.757 kb on - strand, within H281DRAFT_01634at 513.757 kb on - strand, within H281DRAFT_01634

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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511,127 + H281DRAFT_01631 0.54 +0.3
511,128 - H281DRAFT_01631 0.54 +0.9
511,128 - H281DRAFT_01631 0.54 -0.2
511,128 - H281DRAFT_01631 0.54 +0.4
511,145 + H281DRAFT_01631 0.56 -1.0
511,146 - H281DRAFT_01631 0.56 -0.9
511,215 + H281DRAFT_01631 0.63 -0.3
511,444 - H281DRAFT_01631 0.87 +1.0
511,564 - -0.5
511,586 + -0.7
511,704 - +0.7
511,766 - +0.2
511,828 - -0.0
511,893 + -0.1
511,905 + -0.6
511,905 + +0.7
511,906 - +0.4
511,906 - +0.7
511,958 - -0.0
511,958 - +0.3
511,969 - +0.3
512,011 - +0.4
512,025 - +0.3
512,102 - +1.4
512,109 - +0.7
512,128 + +1.2
512,128 + +0.8
512,251 - H281DRAFT_01632 0.22 +1.1
512,251 - H281DRAFT_01632 0.22 +1.8
512,251 - H281DRAFT_01632 0.22 +0.7
512,251 - H281DRAFT_01632 0.22 -0.3
512,251 - H281DRAFT_01632 0.22 +1.1
512,251 - H281DRAFT_01632 0.22 +1.6
512,265 + +3.7
512,266 - H281DRAFT_01632 0.24 +0.2
512,266 - H281DRAFT_01632 0.24 +0.8
512,266 - H281DRAFT_01632 0.24 +1.2
512,266 - H281DRAFT_01632 0.24 +0.8
512,289 + H281DRAFT_01632 0.27 +2.2
512,290 - H281DRAFT_01632 0.27 +0.3
512,312 + H281DRAFT_01632 0.30 +1.7
512,314 + H281DRAFT_01632 0.30 +0.5
512,314 + H281DRAFT_01632 0.30 +1.2
512,314 + H281DRAFT_01632 0.30 +1.3
512,315 - H281DRAFT_01632 0.30 +1.2
512,315 - H281DRAFT_01632 0.30 +1.5
512,403 + H281DRAFT_01632 0.42 +3.0
512,403 + H281DRAFT_01632 0.42 +0.8
512,403 + H281DRAFT_01632 0.42 +1.5
512,403 + H281DRAFT_01632 0.42 +2.3
512,404 - H281DRAFT_01632 0.43 +1.1
512,540 - H281DRAFT_01632 0.61 +1.1
512,540 - H281DRAFT_01632 0.61 +0.5
512,557 + H281DRAFT_01632 0.64 +1.1
512,557 + H281DRAFT_01632 0.64 +2.8
512,807 + +1.6
512,807 + +0.1
512,808 - +1.1
512,808 - +1.3
512,901 - H281DRAFT_01633 0.22 +0.8
513,179 + H281DRAFT_01633 0.88 +1.4
513,193 + +0.8
513,193 + +1.2
513,194 - +1.3
513,194 - +0.9
513,205 + +0.2
513,205 + +1.3
513,205 + +1.3
513,205 + +1.1
513,205 - +0.5
513,206 - +1.7
513,206 - +2.1
513,206 - -0.4
513,206 - +1.7
513,341 + H281DRAFT_01634 0.11 -0.9
513,341 + H281DRAFT_01634 0.11 -0.2
513,341 + H281DRAFT_01634 0.11 -0.1
513,342 - H281DRAFT_01634 0.11 -0.8
513,342 - H281DRAFT_01634 0.11 +1.0
513,386 - H281DRAFT_01634 0.18 +0.3
513,419 + H281DRAFT_01634 0.24 -0.6
513,419 + H281DRAFT_01634 0.24 +0.7
513,420 - H281DRAFT_01634 0.24 +0.7
513,440 + H281DRAFT_01634 0.27 -0.0
513,440 + H281DRAFT_01634 0.27 +1.8
513,440 + H281DRAFT_01634 0.27 +0.6
513,440 + H281DRAFT_01634 0.27 +0.4
513,440 + H281DRAFT_01634 0.27 -1.0
513,441 - H281DRAFT_01634 0.27 +0.2
513,441 - H281DRAFT_01634 0.27 +0.4
513,441 - H281DRAFT_01634 0.27 +0.4
513,441 - H281DRAFT_01634 0.27 +1.0
513,441 - H281DRAFT_01634 0.27 +0.1
513,571 + H281DRAFT_01634 0.49 -0.6
513,572 - H281DRAFT_01634 0.49 -0.4
513,698 + H281DRAFT_01634 0.71 +0.6
513,698 + H281DRAFT_01634 0.71 +0.3
513,698 + H281DRAFT_01634 0.71 -0.1
513,699 - H281DRAFT_01634 0.71 +1.0
513,699 - H281DRAFT_01634 0.71 -0.0
513,699 - H281DRAFT_01634 0.71 +0.5
513,699 - H281DRAFT_01634 0.71 -0.3
513,699 - H281DRAFT_01634 0.71 -0.3
513,699 - H281DRAFT_01634 0.71 +0.4
513,699 - H281DRAFT_01634 0.71 +2.0
513,756 + H281DRAFT_01634 0.80 +0.4
513,756 + H281DRAFT_01634 0.80 +0.3
513,757 - H281DRAFT_01634 0.81 -0.2
513,757 - H281DRAFT_01634 0.81 -0.6

Or see this region's nucleotide sequence