Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01441

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01440 and H281DRAFT_01441 overlap by 4 nucleotidesH281DRAFT_01441 and H281DRAFT_01442 are separated by 64 nucleotides H281DRAFT_01440: H281DRAFT_01440 - two-component system, OmpR family, heavy metal sensor histidine kinase CusS, at 299,537 to 301,042 _01440 H281DRAFT_01441: H281DRAFT_01441 - two component heavy metal response transcriptional regulator, winged helix family, at 301,039 to 301,725 _01441 H281DRAFT_01442: H281DRAFT_01442 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 301,790 to 303,328 _01442 Position (kb) 301 302Strain fitness (log2 ratio) -1 0 1at 300.116 kb on + strand, within H281DRAFT_01440at 300.425 kb on - strand, within H281DRAFT_01440at 300.606 kb on + strand, within H281DRAFT_01440at 300.763 kb on - strand, within H281DRAFT_01440at 300.796 kb on - strand, within H281DRAFT_01440at 301.171 kb on - strand, within H281DRAFT_01441at 302.190 kb on + strand, within H281DRAFT_01442at 302.586 kb on - strand, within H281DRAFT_01442

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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300,116 + H281DRAFT_01440 0.38 -0.1
300,425 - H281DRAFT_01440 0.59 -0.3
300,606 + H281DRAFT_01440 0.71 -0.2
300,763 - H281DRAFT_01440 0.81 +0.6
300,796 - H281DRAFT_01440 0.84 -1.1
301,171 - H281DRAFT_01441 0.19 +0.9
302,190 + H281DRAFT_01442 0.26 +0.1
302,586 - H281DRAFT_01442 0.52 +0.0

Or see this region's nucleotide sequence