Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01394

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01393 and H281DRAFT_01394 overlap by 4 nucleotidesH281DRAFT_01394 and H281DRAFT_01395 are separated by 19 nucleotides H281DRAFT_01393: H281DRAFT_01393 - hydrophobic/amphiphilic exporter-1, HAE1 family, at 246,276 to 249,407 _01393 H281DRAFT_01394: H281DRAFT_01394 - RND family efflux transporter, MFP subunit, at 249,404 to 250,612 _01394 H281DRAFT_01395: H281DRAFT_01395 - efflux transporter, outer membrane factor (OMF) lipoprotein, NodT family, at 250,632 to 252,203 _01395 Position (kb) 249 250 251Strain fitness (log2 ratio) -2 -1 0 1 2 3at 248.797 kb on - strand, within H281DRAFT_01393at 248.962 kb on + strand, within H281DRAFT_01393at 248.990 kb on - strand, within H281DRAFT_01393at 249.379 kb on - strandat 250.007 kb on + strand, within H281DRAFT_01394at 250.008 kb on - strand, within H281DRAFT_01394at 250.191 kb on + strand, within H281DRAFT_01394at 250.232 kb on + strand, within H281DRAFT_01394

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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248,797 - H281DRAFT_01393 0.80 +2.8
248,962 + H281DRAFT_01393 0.86 -0.3
248,990 - H281DRAFT_01393 0.87 +0.0
249,379 - -0.1
250,007 + H281DRAFT_01394 0.50 -1.8
250,008 - H281DRAFT_01394 0.50 -0.4
250,191 + H281DRAFT_01394 0.65 -1.4
250,232 + H281DRAFT_01394 0.68 +0.6

Or see this region's nucleotide sequence