Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt H281DRAFT_01389 and H281DRAFT_01390 are separated by 197 nucleotides H281DRAFT_01390 and H281DRAFT_01391 are separated by 22 nucleotides H281DRAFT_01391 and H281DRAFT_01392 overlap by 4 nucleotides H281DRAFT_01392 and H281DRAFT_01393 are separated by 16 nucleotides
H281DRAFT_01389: H281DRAFT_01389 - PAS domain S-box-containing protein, at 240,969 to 243,668
_01389
H281DRAFT_01390: H281DRAFT_01390 - hypothetical protein, at 243,866 to 244,132
_01390
H281DRAFT_01391: H281DRAFT_01391 - two-component system, OmpR family, osmolarity sensor histidine kinase EnvZ, at 244,155 to 245,549
_01391
H281DRAFT_01392: H281DRAFT_01392 - two component transcriptional regulator, winged helix family, at 245,546 to 246,259
_01392
H281DRAFT_01393: H281DRAFT_01393 - hydrophobic/amphiphilic exporter-1, HAE1 family, at 246,276 to 249,407
_01393
Position (kb) 244
245
246 Strain fitness (log2 ratio) -2
-1
0
1 at 243.435 kb on + strand at 243.727 kb on - strand at 243.728 kb on + strand at 243.729 kb on - strand at 243.729 kb on - strand at 243.790 kb on - strand at 244.010 kb on + strand, within H281DRAFT_01390 at 244.381 kb on + strand, within H281DRAFT_01391 at 244.382 kb on - strand, within H281DRAFT_01391 at 244.382 kb on - strand, within H281DRAFT_01391 at 245.384 kb on - strand, within H281DRAFT_01391 at 245.574 kb on + strand at 245.956 kb on - strand, within H281DRAFT_01392 at 246.337 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C) remove 243,435 + +1.0 243,727 - +1.6 243,728 + -0.8 243,729 - -2.4 243,729 - -1.3 243,790 - -0.6 244,010 + H281DRAFT_01390 0.54 +1.3 244,381 + H281DRAFT_01391 0.16 +0.4 244,382 - H281DRAFT_01391 0.16 -0.1 244,382 - H281DRAFT_01391 0.16 +0.4 245,384 - H281DRAFT_01391 0.88 +0.6 245,574 + +0.5 245,956 - H281DRAFT_01392 0.57 +0.2 246,337 + +0.2
Or see this region's nucleotide sequence