Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01287

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01286 and H281DRAFT_01287 overlap by 4 nucleotidesH281DRAFT_01287 and H281DRAFT_01288 overlap by 4 nucleotidesH281DRAFT_01288 and H281DRAFT_01289 overlap by 4 nucleotides H281DRAFT_01286: H281DRAFT_01286 - mxaL protein, at 124,466 to 125,500 _01286 H281DRAFT_01287: H281DRAFT_01287 - mxaK protein, at 125,497 to 126,066 _01287 H281DRAFT_01288: H281DRAFT_01288 - mxaC protein, at 126,063 to 127,052 _01288 H281DRAFT_01289: H281DRAFT_01289 - mxaA protein, at 127,049 to 127,984 _01289 Position (kb) 125 126 127Strain fitness (log2 ratio) -1 0 1at 124.532 kb on - strandat 125.112 kb on + strand, within H281DRAFT_01286at 125.170 kb on - strand, within H281DRAFT_01286at 125.373 kb on + strand, within H281DRAFT_01286at 125.374 kb on - strand, within H281DRAFT_01286at 125.374 kb on - strand, within H281DRAFT_01286at 126.000 kb on - strand, within H281DRAFT_01287at 126.046 kb on - strandat 126.046 kb on - strandat 126.046 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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124,532 - +0.3
125,112 + H281DRAFT_01286 0.62 +0.1
125,170 - H281DRAFT_01286 0.68 +1.4
125,373 + H281DRAFT_01286 0.88 +1.1
125,374 - H281DRAFT_01286 0.88 +0.1
125,374 - H281DRAFT_01286 0.88 -1.2
126,000 - H281DRAFT_01287 0.88 -0.4
126,046 - +0.2
126,046 - +0.5
126,046 - +0.7

Or see this region's nucleotide sequence