Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01118

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntH281DRAFT_01117 and H281DRAFT_01118 are separated by 12 nucleotidesH281DRAFT_01118 and H281DRAFT_01119 are separated by 249 nucleotides H281DRAFT_01117: H281DRAFT_01117 - acetaldehyde dehydrogenase (EC 1.2.1.3) (from data), at 1,257,333 to 1,259,720 _01117 H281DRAFT_01118: H281DRAFT_01118 - deoxyribose-phosphate aldolase, at 1,259,733 to 1,260,746 _01118 H281DRAFT_01119: H281DRAFT_01119 - monosaccharide ABC transporter ATP-binding protein, CUT2 family, at 1,260,996 to 1,262,627 _01119 Position (kb) 1259 1260 1261Strain fitness (log2 ratio) -1 0 1 2 3 4at 1260.206 kb on - strand, within H281DRAFT_01118at 1260.379 kb on + strand, within H281DRAFT_01118at 1260.804 kb on + strandat 1261.194 kb on + strand, within H281DRAFT_01119at 1261.282 kb on - strand, within H281DRAFT_01119at 1261.614 kb on + strand, within H281DRAFT_01119at 1261.615 kb on - strand, within H281DRAFT_01119

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
remove
1,260,206 - H281DRAFT_01118 0.47 +1.3
1,260,379 + H281DRAFT_01118 0.64 -0.7
1,260,804 + +1.2
1,261,194 + H281DRAFT_01119 0.12 -1.1
1,261,282 - H281DRAFT_01119 0.18 +4.0
1,261,614 + H281DRAFT_01119 0.38 -0.1
1,261,615 - H281DRAFT_01119 0.38 -0.9

Or see this region's nucleotide sequence