Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01114

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01113 and H281DRAFT_01114 are separated by 60 nucleotidesH281DRAFT_01114 and H281DRAFT_01115 are separated by 101 nucleotides H281DRAFT_01113: H281DRAFT_01113 - deoxynucleoside transporter, ATPase component (from data), at 1,252,410 to 1,253,957 _01113 H281DRAFT_01114: H281DRAFT_01114 - deoxynucleoside transporter, substrate-binding component (from data), at 1,254,018 to 1,255,022 _01114 H281DRAFT_01115: H281DRAFT_01115 - deoxynucleoside transporter, permease component 1 (from data), at 1,255,124 to 1,256,197 _01115 Position (kb) 1254 1255 1256Strain fitness (log2 ratio) -1 0 1 2at 1253.397 kb on - strand, within H281DRAFT_01113at 1253.875 kb on - strandat 1253.875 kb on - strandat 1254.037 kb on + strandat 1254.038 kb on - strandat 1254.038 kb on - strandat 1254.479 kb on - strand, within H281DRAFT_01114at 1254.977 kb on + strandat 1255.358 kb on - strand, within H281DRAFT_01115at 1255.762 kb on + strand, within H281DRAFT_01115at 1255.888 kb on - strand, within H281DRAFT_01115

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,253,397 - H281DRAFT_01113 0.64 +1.4
1,253,875 - +1.6
1,253,875 - +0.7
1,254,037 + +0.6
1,254,038 - -0.9
1,254,038 - +1.8
1,254,479 - H281DRAFT_01114 0.46 -0.4
1,254,977 + -0.5
1,255,358 - H281DRAFT_01115 0.22 -0.3
1,255,762 + H281DRAFT_01115 0.59 -0.7
1,255,888 - H281DRAFT_01115 0.71 -0.6

Or see this region's nucleotide sequence