Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_01047

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_01046 and H281DRAFT_01047 are separated by 18 nucleotidesH281DRAFT_01047 and H281DRAFT_01048 are separated by 314 nucleotides H281DRAFT_01046: H281DRAFT_01046 - aliphatic nitrilase, at 1,175,773 to 1,176,789 _01046 H281DRAFT_01047: H281DRAFT_01047 - GTP cyclohydrolase II, at 1,176,808 to 1,177,290 _01047 H281DRAFT_01048: H281DRAFT_01048 - transcriptional regulator, GntR family, at 1,177,605 to 1,179,086 _01048 Position (kb) 1176 1177 1178Strain fitness (log2 ratio) -1 0 1at 1176.573 kb on - strand, within H281DRAFT_01046at 1176.959 kb on + strand, within H281DRAFT_01047at 1177.828 kb on + strand, within H281DRAFT_01048at 1177.861 kb on - strand, within H281DRAFT_01048at 1178.251 kb on + strand, within H281DRAFT_01048

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,176,573 - H281DRAFT_01046 0.79 +0.2
1,176,959 + H281DRAFT_01047 0.31 +0.9
1,177,828 + H281DRAFT_01048 0.15 +0.3
1,177,861 - H281DRAFT_01048 0.17 -0.4
1,178,251 + H281DRAFT_01048 0.44 +0.2

Or see this region's nucleotide sequence