Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00932

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00930 and H281DRAFT_00931 are separated by 70 nucleotidesH281DRAFT_00931 and H281DRAFT_00932 are separated by 46 nucleotidesH281DRAFT_00932 and H281DRAFT_00933 are separated by 176 nucleotidesH281DRAFT_00933 and H281DRAFT_00934 are separated by 262 nucleotides H281DRAFT_00930: H281DRAFT_00930 - phosphinothricin acetyltransferase, at 1,033,941 to 1,034,465 _00930 H281DRAFT_00931: H281DRAFT_00931 - TatD DNase family protein, at 1,034,536 to 1,035,330 _00931 H281DRAFT_00932: H281DRAFT_00932 - hypothetical protein, at 1,035,377 to 1,036,117 _00932 H281DRAFT_00933: H281DRAFT_00933 - hypothetical protein, at 1,036,294 to 1,036,650 _00933 H281DRAFT_00934: H281DRAFT_00934 - Small-conductance mechanosensitive channel, at 1,036,913 to 1,038,148 _00934 Position (kb) 1035 1036 1037Strain fitness (log2 ratio) -2 -1 0 1 2at 1034.608 kb on - strandat 1034.704 kb on + strand, within H281DRAFT_00931at 1034.821 kb on + strand, within H281DRAFT_00931at 1034.822 kb on - strand, within H281DRAFT_00931at 1034.822 kb on - strand, within H281DRAFT_00931at 1034.929 kb on - strand, within H281DRAFT_00931at 1034.955 kb on - strand, within H281DRAFT_00931at 1035.055 kb on + strand, within H281DRAFT_00931at 1035.056 kb on - strand, within H281DRAFT_00931at 1035.193 kb on - strand, within H281DRAFT_00931at 1035.193 kb on - strand, within H281DRAFT_00931at 1035.205 kb on + strand, within H281DRAFT_00931at 1035.215 kb on - strand, within H281DRAFT_00931at 1035.366 kb on + strandat 1035.392 kb on - strandat 1035.392 kb on - strandat 1035.846 kb on - strand, within H281DRAFT_00932at 1036.055 kb on + strandat 1036.055 kb on + strandat 1036.056 kb on - strandat 1036.057 kb on + strandat 1036.057 kb on + strandat 1036.421 kb on - strand, within H281DRAFT_00933at 1036.421 kb on - strand, within H281DRAFT_00933at 1036.421 kb on - strand, within H281DRAFT_00933at 1036.456 kb on - strand, within H281DRAFT_00933at 1036.473 kb on + strand, within H281DRAFT_00933at 1036.477 kb on - strand, within H281DRAFT_00933at 1036.499 kb on - strand, within H281DRAFT_00933at 1036.547 kb on + strand, within H281DRAFT_00933at 1036.555 kb on + strand, within H281DRAFT_00933at 1036.555 kb on + strand, within H281DRAFT_00933at 1036.555 kb on + strand, within H281DRAFT_00933at 1036.556 kb on - strand, within H281DRAFT_00933at 1036.556 kb on - strand, within H281DRAFT_00933at 1036.648 kb on + strandat 1036.648 kb on + strandat 1036.648 kb on + strandat 1036.670 kb on + strandat 1036.782 kb on + strandat 1036.782 kb on + strandat 1036.924 kb on - strandat 1036.970 kb on - strandat 1036.970 kb on - strandat 1036.970 kb on - strandat 1036.970 kb on - strandat 1037.044 kb on + strand, within H281DRAFT_00934at 1037.096 kb on + strand, within H281DRAFT_00934at 1037.097 kb on - strand, within H281DRAFT_00934at 1037.098 kb on + strand, within H281DRAFT_00934

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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1,034,608 - -1.2
1,034,704 + H281DRAFT_00931 0.21 -1.1
1,034,821 + H281DRAFT_00931 0.36 -2.1
1,034,822 - H281DRAFT_00931 0.36 +0.2
1,034,822 - H281DRAFT_00931 0.36 -0.4
1,034,929 - H281DRAFT_00931 0.49 -0.1
1,034,955 - H281DRAFT_00931 0.53 +0.1
1,035,055 + H281DRAFT_00931 0.65 +0.1
1,035,056 - H281DRAFT_00931 0.65 -1.0
1,035,193 - H281DRAFT_00931 0.83 -0.9
1,035,193 - H281DRAFT_00931 0.83 +0.2
1,035,205 + H281DRAFT_00931 0.84 +0.6
1,035,215 - H281DRAFT_00931 0.85 +2.3
1,035,366 + -0.6
1,035,392 - -0.9
1,035,392 - -0.6
1,035,846 - H281DRAFT_00932 0.63 -1.5
1,036,055 + +0.1
1,036,055 + +1.1
1,036,056 - -0.8
1,036,057 + -0.4
1,036,057 + -1.4
1,036,421 - H281DRAFT_00933 0.36 +0.6
1,036,421 - H281DRAFT_00933 0.36 +0.1
1,036,421 - H281DRAFT_00933 0.36 -1.0
1,036,456 - H281DRAFT_00933 0.45 -0.5
1,036,473 + H281DRAFT_00933 0.50 -1.3
1,036,477 - H281DRAFT_00933 0.51 -1.5
1,036,499 - H281DRAFT_00933 0.57 -2.0
1,036,547 + H281DRAFT_00933 0.71 -2.7
1,036,555 + H281DRAFT_00933 0.73 +0.8
1,036,555 + H281DRAFT_00933 0.73 -1.6
1,036,555 + H281DRAFT_00933 0.73 -0.1
1,036,556 - H281DRAFT_00933 0.73 -0.4
1,036,556 - H281DRAFT_00933 0.73 -1.6
1,036,648 + -1.0
1,036,648 + +0.2
1,036,648 + -0.0
1,036,670 + +0.3
1,036,782 + -2.7
1,036,782 + -0.3
1,036,924 - -0.1
1,036,970 - +0.4
1,036,970 - -0.1
1,036,970 - -0.3
1,036,970 - -0.2
1,037,044 + H281DRAFT_00934 0.11 -0.9
1,037,096 + H281DRAFT_00934 0.15 -0.1
1,037,097 - H281DRAFT_00934 0.15 +1.9
1,037,098 + H281DRAFT_00934 0.15 +0.2

Or see this region's nucleotide sequence