Strain Fitness in Paraburkholderia bryophila 376MFSha3.1 around H281DRAFT_00355

Experiment: Deoxyribonucleic from herring sperm 10 mg/mL (C)

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntH281DRAFT_00354 and H281DRAFT_00355 are separated by 336 nucleotidesH281DRAFT_00355 and H281DRAFT_00356 are separated by 221 nucleotides H281DRAFT_00354: H281DRAFT_00354 - transcriptional regulator, AraC family with amidase-like domain, at 386,711 to 387,736 _00354 H281DRAFT_00355: H281DRAFT_00355 - Transcriptional regulator containing an amidase domain and an AraC-type DNA-binding HTH domain, at 388,073 to 388,651 _00355 H281DRAFT_00356: H281DRAFT_00356 - acetolactate synthase, large subunit, at 388,873 to 390,738 _00356 Position (kb) 388 389Strain fitness (log2 ratio) -1 0 1at 387.075 kb on + strand, within H281DRAFT_00354at 387.165 kb on + strand, within H281DRAFT_00354at 387.165 kb on + strand, within H281DRAFT_00354at 387.165 kb on + strand, within H281DRAFT_00354at 387.168 kb on - strand, within H281DRAFT_00354at 387.168 kb on - strand, within H281DRAFT_00354at 387.631 kb on - strand, within H281DRAFT_00354at 388.308 kb on + strand, within H281DRAFT_00355at 388.536 kb on - strand, within H281DRAFT_00355at 388.561 kb on + strand, within H281DRAFT_00355at 388.565 kb on + strand, within H281DRAFT_00355at 388.632 kb on + strandat 388.964 kb on + strandat 389.027 kb on - strandat 389.220 kb on + strand, within H281DRAFT_00356at 389.603 kb on - strand, within H281DRAFT_00356

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Per-strain Table

Position Strand Gene LocusTag Fraction Deoxyribonucleic from herring sperm 10 mg/mL (C)
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387,075 + H281DRAFT_00354 0.35 +0.3
387,165 + H281DRAFT_00354 0.44 +0.1
387,165 + H281DRAFT_00354 0.44 -0.1
387,165 + H281DRAFT_00354 0.44 -0.8
387,168 - H281DRAFT_00354 0.45 +0.3
387,168 - H281DRAFT_00354 0.45 -1.4
387,631 - H281DRAFT_00354 0.90 -1.0
388,308 + H281DRAFT_00355 0.41 +1.6
388,536 - H281DRAFT_00355 0.80 +1.4
388,561 + H281DRAFT_00355 0.84 +0.3
388,565 + H281DRAFT_00355 0.85 -0.2
388,632 + -0.4
388,964 + -0.2
389,027 - -0.6
389,220 + H281DRAFT_00356 0.19 +0.3
389,603 - H281DRAFT_00356 0.39 -0.0

Or see this region's nucleotide sequence