Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_3520 and Dsui_3521 are separated by 4 nucleotides Dsui_3521 and Dsui_3522 are separated by 16 nucleotides
Dsui_3520: Dsui_3520 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,784,304 to 3,787,411
_3520
Dsui_3521: Dsui_3521 - membrane-fusion protein, at 3,787,416 to 3,788,567
_3521
Dsui_3522: Dsui_3522 - outer membrane protein, at 3,788,584 to 3,789,840
_3522
Position (kb)
3787
3788
3789 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1 at 3786.420 kb on - strand, within Dsui_3520 at 3786.436 kb on + strand, within Dsui_3520 at 3786.508 kb on + strand, within Dsui_3520 at 3786.519 kb on + strand, within Dsui_3520 at 3786.536 kb on + strand, within Dsui_3520 at 3786.544 kb on - strand, within Dsui_3520 at 3786.551 kb on + strand at 3786.566 kb on - strand, within Dsui_3520 at 3786.568 kb on + strand, within Dsui_3520 at 3786.632 kb on - strand, within Dsui_3520 at 3786.673 kb on + strand, within Dsui_3520 at 3786.816 kb on - strand, within Dsui_3520 at 3786.828 kb on - strand, within Dsui_3520 at 3787.080 kb on - strand, within Dsui_3520 at 3787.129 kb on + strand at 3787.329 kb on - strand at 3787.384 kb on + strand at 3787.430 kb on + strand at 3787.571 kb on + strand, within Dsui_3521 at 3787.757 kb on - strand, within Dsui_3521 at 3787.757 kb on - strand, within Dsui_3521 at 3787.775 kb on + strand at 3787.783 kb on - strand, within Dsui_3521 at 3787.817 kb on + strand, within Dsui_3521 at 3787.825 kb on - strand, within Dsui_3521 at 3788.034 kb on + strand at 3788.082 kb on - strand, within Dsui_3521 at 3788.096 kb on + strand, within Dsui_3521 at 3788.121 kb on - strand, within Dsui_3521 at 3788.169 kb on - strand, within Dsui_3521 at 3788.207 kb on - strand, within Dsui_3521 at 3788.215 kb on + strand at 3788.238 kb on + strand at 3788.548 kb on - strand at 3788.552 kb on + strand at 3788.842 kb on - strand, within Dsui_3522 at 3788.846 kb on - strand, within Dsui_3522 at 3788.888 kb on + strand at 3788.896 kb on - strand, within Dsui_3522 at 3788.903 kb on + strand at 3788.940 kb on + strand at 3789.079 kb on - strand, within Dsui_3522 at 3789.363 kb on - strand, within Dsui_3522 at 3789.419 kb on - strand at 3789.513 kb on + strand, within Dsui_3522 at 3789.513 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 3,786,420 - Dsui_3520 0.68 -1.1 3,786,436 + Dsui_3520 0.69 -2.7 3,786,508 + Dsui_3520 0.71 -4.1 3,786,519 + Dsui_3520 0.71 -3.3 3,786,536 + Dsui_3520 0.72 -3.8 3,786,544 - Dsui_3520 0.72 -1.3 3,786,551 + -1.4 3,786,566 - Dsui_3520 0.73 -0.1 3,786,568 + Dsui_3520 0.73 -3.8 3,786,632 - Dsui_3520 0.75 -2.5 3,786,673 + Dsui_3520 0.76 -2.9 3,786,816 - Dsui_3520 0.81 -1.3 3,786,828 - Dsui_3520 0.81 -2.2 3,787,080 - Dsui_3520 0.89 -1.8 3,787,129 + -3.7 3,787,329 - -1.0 3,787,384 + -2.5 3,787,430 + -2.8 3,787,571 + Dsui_3521 0.13 -3.6 3,787,757 - Dsui_3521 0.30 -3.7 3,787,757 - Dsui_3521 0.30 -3.2 3,787,775 + -2.4 3,787,783 - Dsui_3521 0.32 -2.2 3,787,817 + Dsui_3521 0.35 -2.6 3,787,825 - Dsui_3521 0.36 -2.9 3,788,034 + -1.5 3,788,082 - Dsui_3521 0.58 -3.4 3,788,096 + Dsui_3521 0.59 -1.8 3,788,121 - Dsui_3521 0.61 -1.3 3,788,169 - Dsui_3521 0.65 -2.2 3,788,207 - Dsui_3521 0.69 -2.0 3,788,215 + -1.9 3,788,238 + -1.6 3,788,548 - -2.4 3,788,552 + -2.9 3,788,842 - Dsui_3522 0.21 -0.5 3,788,846 - Dsui_3522 0.21 -0.3 3,788,888 + -2.7 3,788,896 - Dsui_3522 0.25 +0.4 3,788,903 + -0.1 3,788,940 + -2.7 3,789,079 - Dsui_3522 0.39 -1.1 3,789,363 - Dsui_3522 0.62 -2.5 3,789,419 - -3.1 3,789,513 + Dsui_3522 0.74 -4.2 3,789,513 + -2.1
Or see this region's nucleotide sequence