Strain Fitness in Dechlorosoma suillum PS around Dsui_3521

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3520 and Dsui_3521 are separated by 4 nucleotidesDsui_3521 and Dsui_3522 are separated by 16 nucleotides Dsui_3520: Dsui_3520 - heavy metal efflux pump, cobalt-zinc-cadmium, at 3,784,304 to 3,787,411 _3520 Dsui_3521: Dsui_3521 - membrane-fusion protein, at 3,787,416 to 3,788,567 _3521 Dsui_3522: Dsui_3522 - outer membrane protein, at 3,788,584 to 3,789,840 _3522 Position (kb) 3787 3788 3789Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 3786.420 kb on - strand, within Dsui_3520at 3786.436 kb on + strand, within Dsui_3520at 3786.508 kb on + strand, within Dsui_3520at 3786.519 kb on + strand, within Dsui_3520at 3786.536 kb on + strand, within Dsui_3520at 3786.544 kb on - strand, within Dsui_3520at 3786.551 kb on + strandat 3786.566 kb on - strand, within Dsui_3520at 3786.568 kb on + strand, within Dsui_3520at 3786.632 kb on - strand, within Dsui_3520at 3786.673 kb on + strand, within Dsui_3520at 3786.816 kb on - strand, within Dsui_3520at 3786.828 kb on - strand, within Dsui_3520at 3787.080 kb on - strand, within Dsui_3520at 3787.129 kb on + strandat 3787.329 kb on - strandat 3787.384 kb on + strandat 3787.430 kb on + strandat 3787.571 kb on + strand, within Dsui_3521at 3787.757 kb on - strand, within Dsui_3521at 3787.757 kb on - strand, within Dsui_3521at 3787.775 kb on + strandat 3787.783 kb on - strand, within Dsui_3521at 3787.817 kb on + strand, within Dsui_3521at 3787.825 kb on - strand, within Dsui_3521at 3788.034 kb on + strandat 3788.082 kb on - strand, within Dsui_3521at 3788.096 kb on + strand, within Dsui_3521at 3788.121 kb on - strand, within Dsui_3521at 3788.169 kb on - strand, within Dsui_3521at 3788.207 kb on - strand, within Dsui_3521at 3788.215 kb on + strandat 3788.238 kb on + strandat 3788.548 kb on - strandat 3788.552 kb on + strandat 3788.842 kb on - strand, within Dsui_3522at 3788.846 kb on - strand, within Dsui_3522at 3788.888 kb on + strandat 3788.896 kb on - strand, within Dsui_3522at 3788.903 kb on + strandat 3788.940 kb on + strandat 3789.079 kb on - strand, within Dsui_3522at 3789.363 kb on - strand, within Dsui_3522at 3789.419 kb on - strandat 3789.513 kb on + strand, within Dsui_3522at 3789.513 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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3,786,420 - Dsui_3520 0.68 -1.1
3,786,436 + Dsui_3520 0.69 -2.7
3,786,508 + Dsui_3520 0.71 -4.1
3,786,519 + Dsui_3520 0.71 -3.3
3,786,536 + Dsui_3520 0.72 -3.8
3,786,544 - Dsui_3520 0.72 -1.3
3,786,551 + -1.4
3,786,566 - Dsui_3520 0.73 -0.1
3,786,568 + Dsui_3520 0.73 -3.8
3,786,632 - Dsui_3520 0.75 -2.5
3,786,673 + Dsui_3520 0.76 -2.9
3,786,816 - Dsui_3520 0.81 -1.3
3,786,828 - Dsui_3520 0.81 -2.2
3,787,080 - Dsui_3520 0.89 -1.8
3,787,129 + -3.7
3,787,329 - -1.0
3,787,384 + -2.5
3,787,430 + -2.8
3,787,571 + Dsui_3521 0.13 -3.6
3,787,757 - Dsui_3521 0.30 -3.7
3,787,757 - Dsui_3521 0.30 -3.2
3,787,775 + -2.4
3,787,783 - Dsui_3521 0.32 -2.2
3,787,817 + Dsui_3521 0.35 -2.6
3,787,825 - Dsui_3521 0.36 -2.9
3,788,034 + -1.5
3,788,082 - Dsui_3521 0.58 -3.4
3,788,096 + Dsui_3521 0.59 -1.8
3,788,121 - Dsui_3521 0.61 -1.3
3,788,169 - Dsui_3521 0.65 -2.2
3,788,207 - Dsui_3521 0.69 -2.0
3,788,215 + -1.9
3,788,238 + -1.6
3,788,548 - -2.4
3,788,552 + -2.9
3,788,842 - Dsui_3522 0.21 -0.5
3,788,846 - Dsui_3522 0.21 -0.3
3,788,888 + -2.7
3,788,896 - Dsui_3522 0.25 +0.4
3,788,903 + -0.1
3,788,940 + -2.7
3,789,079 - Dsui_3522 0.39 -1.1
3,789,363 - Dsui_3522 0.62 -2.5
3,789,419 - -3.1
3,789,513 + Dsui_3522 0.74 -4.2
3,789,513 + -2.1

Or see this region's nucleotide sequence