Strain Fitness in Dechlorosoma suillum PS around Dsui_3450

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_3449 and Dsui_3450 are separated by 139 nucleotidesDsui_3450 and Dsui_3451 are separated by 73 nucleotides Dsui_3449: Dsui_3449 - PAS domain S-box/diguanylate cyclase (GGDEF) domain-containing protein, at 3,708,323 to 3,710,467 _3449 Dsui_3450: Dsui_3450 - acetyl-CoA hydrolase, at 3,710,607 to 3,711,902 _3450 Dsui_3451: Dsui_3451 - sugar phosphate permease, at 3,711,976 to 3,713,259 _3451 Position (kb) 3710 3711 3712Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 3709.857 kb on + strand, within Dsui_3449at 3709.862 kb on + strand, within Dsui_3449at 3709.875 kb on - strand, within Dsui_3449at 3709.937 kb on - strand, within Dsui_3449at 3709.950 kb on + strand, within Dsui_3449at 3709.950 kb on + strand, within Dsui_3449at 3710.126 kb on - strand, within Dsui_3449at 3710.168 kb on - strand, within Dsui_3449at 3710.359 kb on - strandat 3710.543 kb on + strandat 3710.605 kb on + strandat 3710.613 kb on - strandat 3710.627 kb on - strandat 3710.875 kb on - strand, within Dsui_3450at 3710.916 kb on + strand, within Dsui_3450at 3710.921 kb on + strand, within Dsui_3450at 3710.960 kb on + strand, within Dsui_3450at 3711.028 kb on + strand, within Dsui_3450at 3711.056 kb on - strand, within Dsui_3450at 3711.111 kb on - strand, within Dsui_3450at 3711.115 kb on + strand, within Dsui_3450at 3711.163 kb on - strand, within Dsui_3450at 3711.232 kb on + strand, within Dsui_3450at 3711.345 kb on - strand, within Dsui_3450at 3711.347 kb on + strand, within Dsui_3450at 3711.353 kb on + strand, within Dsui_3450at 3711.417 kb on - strand, within Dsui_3450at 3711.434 kb on + strand, within Dsui_3450at 3711.434 kb on + strand, within Dsui_3450at 3711.442 kb on - strand, within Dsui_3450at 3711.726 kb on - strand, within Dsui_3450at 3711.726 kb on - strand, within Dsui_3450at 3711.784 kb on + strandat 3711.789 kb on + strandat 3711.843 kb on + strandat 3711.904 kb on - strandat 3711.981 kb on + strandat 3712.319 kb on - strand, within Dsui_3451at 3712.335 kb on + strand, within Dsui_3451at 3712.395 kb on + strand, within Dsui_3451at 3712.452 kb on + strand, within Dsui_3451at 3712.487 kb on - strand, within Dsui_3451at 3712.494 kb on + strand, within Dsui_3451at 3712.519 kb on + strand, within Dsui_3451at 3712.608 kb on - strand, within Dsui_3451at 3712.655 kb on + strand, within Dsui_3451at 3712.655 kb on + strand, within Dsui_3451at 3712.716 kb on - strand, within Dsui_3451

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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3,709,857 + Dsui_3449 0.72 -0.2
3,709,862 + Dsui_3449 0.72 +0.1
3,709,875 - Dsui_3449 0.72 -3.4
3,709,937 - Dsui_3449 0.75 -1.1
3,709,950 + Dsui_3449 0.76 -0.6
3,709,950 + Dsui_3449 0.76 +0.4
3,710,126 - Dsui_3449 0.84 -1.1
3,710,168 - Dsui_3449 0.86 -0.5
3,710,359 - -0.3
3,710,543 + +0.2
3,710,605 + +1.1
3,710,613 - -0.1
3,710,627 - +0.9
3,710,875 - Dsui_3450 0.21 +1.0
3,710,916 + Dsui_3450 0.24 +1.4
3,710,921 + Dsui_3450 0.24 +1.3
3,710,960 + Dsui_3450 0.27 +1.4
3,711,028 + Dsui_3450 0.32 +1.5
3,711,056 - Dsui_3450 0.35 +0.6
3,711,111 - Dsui_3450 0.39 +1.0
3,711,115 + Dsui_3450 0.39 +1.0
3,711,163 - Dsui_3450 0.43 -1.0
3,711,232 + Dsui_3450 0.48 +1.1
3,711,345 - Dsui_3450 0.57 -0.5
3,711,347 + Dsui_3450 0.57 +0.6
3,711,353 + Dsui_3450 0.58 +1.0
3,711,417 - Dsui_3450 0.62 +0.8
3,711,434 + Dsui_3450 0.64 +1.1
3,711,434 + Dsui_3450 0.64 +1.0
3,711,442 - Dsui_3450 0.64 +0.9
3,711,726 - Dsui_3450 0.86 +1.5
3,711,726 - Dsui_3450 0.86 +0.5
3,711,784 + +1.4
3,711,789 + +1.1
3,711,843 + +1.0
3,711,904 - -1.7
3,711,981 + -0.2
3,712,319 - Dsui_3451 0.27 +0.6
3,712,335 + Dsui_3451 0.28 +0.1
3,712,395 + Dsui_3451 0.33 -2.3
3,712,452 + Dsui_3451 0.37 +2.2
3,712,487 - Dsui_3451 0.40 +0.5
3,712,494 + Dsui_3451 0.40 +0.2
3,712,519 + Dsui_3451 0.42 +1.5
3,712,608 - Dsui_3451 0.49 +0.6
3,712,655 + Dsui_3451 0.53 +0.5
3,712,655 + Dsui_3451 0.53 -0.8
3,712,716 - Dsui_3451 0.58 +0.4

Or see this region's nucleotide sequence