Strain Fitness in Dechlorosoma suillum PS around Dsui_2662

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_2660 and Dsui_2661 overlap by 4 nucleotidesDsui_2661 and Dsui_2662 are separated by 139 nucleotidesDsui_2662 and Dsui_2663 are separated by 21 nucleotidesDsui_2663 and Dsui_2664 are separated by 7 nucleotidesDsui_2664 and Dsui_2665 are separated by 106 nucleotides Dsui_2660: Dsui_2660 - hypothetical protein, at 2,814,838 to 2,815,320 _2660 Dsui_2661: Dsui_2661 - cytosine/adenosine deaminase, at 2,815,317 to 2,815,778 _2661 Dsui_2662: Dsui_2662 - hypothetical protein, at 2,815,918 to 2,816,817 _2662 Dsui_2663: Dsui_2663 - hypothetical protein, at 2,816,839 to 2,817,024 _2663 Dsui_2664: Dsui_2664 - hypothetical protein, at 2,817,032 to 2,817,352 _2664 Dsui_2665: Dsui_2665 - putative nucleoside-diphosphate sugar epimerase, at 2,817,459 to 2,818,313 _2665 Position (kb) 2815 2816 2817Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2815.330 kb on + strandat 2815.848 kb on - strandat 2815.848 kb on - strandat 2815.929 kb on + strandat 2815.929 kb on + strandat 2815.988 kb on + strandat 2816.006 kb on - strandat 2816.065 kb on - strand, within Dsui_2662at 2816.067 kb on + strandat 2816.075 kb on - strand, within Dsui_2662at 2816.077 kb on - strandat 2816.160 kb on + strand, within Dsui_2662at 2816.179 kb on - strandat 2816.209 kb on + strandat 2816.217 kb on - strand, within Dsui_2662at 2816.217 kb on - strandat 2816.332 kb on + strand, within Dsui_2662at 2816.333 kb on - strand, within Dsui_2662at 2816.479 kb on + strand, within Dsui_2662at 2816.498 kb on - strand, within Dsui_2662at 2816.508 kb on + strand, within Dsui_2662at 2816.512 kb on - strand, within Dsui_2662at 2816.589 kb on - strandat 2816.599 kb on - strandat 2816.606 kb on - strand, within Dsui_2662at 2816.642 kb on + strand, within Dsui_2662at 2816.643 kb on - strand, within Dsui_2662at 2816.738 kb on + strandat 2816.738 kb on + strandat 2816.779 kb on + strandat 2816.782 kb on - strandat 2816.787 kb on - strandat 2816.797 kb on - strandat 2816.830 kb on + strandat 2816.839 kb on - strandat 2816.929 kb on + strand, within Dsui_2663at 2816.962 kb on - strandat 2816.971 kb on - strand, within Dsui_2663at 2816.997 kb on + strand, within Dsui_2663at 2817.031 kb on - strandat 2817.045 kb on - strandat 2817.103 kb on + strandat 2817.123 kb on - strand, within Dsui_2664at 2817.167 kb on + strandat 2817.175 kb on - strand, within Dsui_2664at 2817.226 kb on - strand, within Dsui_2664at 2817.226 kb on - strand, within Dsui_2664at 2817.519 kb on + strandat 2817.655 kb on - strandat 2817.672 kb on - strandat 2817.708 kb on + strandat 2817.716 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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2,815,330 + -1.2
2,815,848 - +0.7
2,815,848 - +1.2
2,815,929 + +0.3
2,815,929 + +0.7
2,815,988 + +1.0
2,816,006 - -0.9
2,816,065 - Dsui_2662 0.16 +3.7
2,816,067 + +1.2
2,816,075 - Dsui_2662 0.17 -0.5
2,816,077 - -1.1
2,816,160 + Dsui_2662 0.27 +1.3
2,816,179 - -2.4
2,816,209 + +1.6
2,816,217 - Dsui_2662 0.33 -1.4
2,816,217 - +1.0
2,816,332 + Dsui_2662 0.46 +1.3
2,816,333 - Dsui_2662 0.46 -2.3
2,816,479 + Dsui_2662 0.62 +1.3
2,816,498 - Dsui_2662 0.64 -0.4
2,816,508 + Dsui_2662 0.66 +0.7
2,816,512 - Dsui_2662 0.66 -2.8
2,816,589 - -1.1
2,816,599 - -0.2
2,816,606 - Dsui_2662 0.76 -3.3
2,816,642 + Dsui_2662 0.80 +1.6
2,816,643 - Dsui_2662 0.81 -0.6
2,816,738 + +1.5
2,816,738 + +1.6
2,816,779 + +1.8
2,816,782 - -2.5
2,816,787 - -0.7
2,816,797 - -2.1
2,816,830 + +1.4
2,816,839 - -0.4
2,816,929 + Dsui_2663 0.48 +0.9
2,816,962 - +0.3
2,816,971 - Dsui_2663 0.71 -0.0
2,816,997 + Dsui_2663 0.85 +0.9
2,817,031 - -0.7
2,817,045 - +0.4
2,817,103 + +0.3
2,817,123 - Dsui_2664 0.28 +2.0
2,817,167 + +1.3
2,817,175 - Dsui_2664 0.45 +1.3
2,817,226 - Dsui_2664 0.60 +1.2
2,817,226 - Dsui_2664 0.60 +1.1
2,817,519 + -2.5
2,817,655 - -1.7
2,817,672 - -0.2
2,817,708 + -1.2
2,817,716 - -1.0

Or see this region's nucleotide sequence