Strain Fitness in Dechlorosoma suillum PS around Dsui_2553

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntDsui_2550 and Dsui_2551 are separated by 67 nucleotidesDsui_2551 and Dsui_2552 are separated by 172 nucleotidesDsui_2552 and Dsui_2553 overlap by 4 nucleotidesDsui_2553 and Dsui_2554 are separated by 127 nucleotidesDsui_2554 and Dsui_2555 overlap by 4 nucleotidesDsui_2555 and Dsui_2556 are separated by 87 nucleotides Dsui_2550: Dsui_2550 - Protein of unknown function (DUF2726), at 2,703,131 to 2,703,694 _2550 Dsui_2551: Dsui_2551 - Helix-destabilising protein, at 2,703,762 to 2,704,055 _2551 Dsui_2552: Dsui_2552 - hypothetical protein, at 2,704,228 to 2,704,503 _2552 Dsui_2553: Dsui_2553 - Phage X family/Phage replication protein CRI, at 2,704,500 to 2,705,582 _2553 Dsui_2554: Dsui_2554 - hypothetical protein, at 2,705,710 to 2,705,973 _2554 Dsui_2555: Dsui_2555 - Bacteriophage coat protein B, at 2,705,970 to 2,706,167 _2555 Dsui_2556: Dsui_2556 - hypothetical protein, at 2,706,255 to 2,707,346 _2556 Position (kb) 2704 2705 2706Strain fitness (log2 ratio) -3 -2 -1 0 1 2 3at 2703.542 kb on - strand, within Dsui_2550at 2703.605 kb on - strand, within Dsui_2550at 2703.786 kb on + strandat 2703.794 kb on - strand, within Dsui_2551at 2703.794 kb on - strand, within Dsui_2551at 2703.794 kb on - strand, within Dsui_2551at 2703.830 kb on + strandat 2703.838 kb on - strand, within Dsui_2551at 2703.876 kb on - strand, within Dsui_2551at 2703.946 kb on - strand, within Dsui_2551at 2703.955 kb on + strand, within Dsui_2551at 2703.955 kb on + strand, within Dsui_2551at 2703.955 kb on + strand, within Dsui_2551at 2703.963 kb on - strand, within Dsui_2551at 2703.963 kb on - strand, within Dsui_2551at 2704.040 kb on + strandat 2704.048 kb on - strandat 2704.065 kb on - strandat 2704.065 kb on - strandat 2704.065 kb on - strandat 2704.145 kb on - strandat 2704.248 kb on + strandat 2704.606 kb on - strandat 2704.815 kb on + strand, within Dsui_2553at 2704.855 kb on + strand, within Dsui_2553at 2704.864 kb on - strand, within Dsui_2553at 2704.869 kb on - strand, within Dsui_2553at 2705.024 kb on - strand, within Dsui_2553at 2705.077 kb on + strand, within Dsui_2553at 2705.335 kb on + strand, within Dsui_2553at 2705.527 kb on - strandat 2705.577 kb on + strandat 2705.680 kb on - strandat 2705.681 kb on - strandat 2705.753 kb on - strand, within Dsui_2554at 2705.824 kb on + strand, within Dsui_2554at 2705.894 kb on + strand, within Dsui_2554at 2705.939 kb on + strandat 2706.007 kb on + strand, within Dsui_2555at 2706.015 kb on - strand, within Dsui_2555at 2706.043 kb on - strand, within Dsui_2555at 2706.146 kb on - strand, within Dsui_2555at 2706.170 kb on + strandat 2706.516 kb on - strand, within Dsui_2556at 2706.542 kb on - strand, within Dsui_2556at 2706.542 kb on - strand, within Dsui_2556at 2706.542 kb on - strand

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
remove
2,703,542 - Dsui_2550 0.73 -1.7
2,703,605 - Dsui_2550 0.84 +1.5
2,703,786 + -0.5
2,703,794 - Dsui_2551 0.11 -0.8
2,703,794 - Dsui_2551 0.11 -0.9
2,703,794 - Dsui_2551 0.11 -0.4
2,703,830 + -1.6
2,703,838 - Dsui_2551 0.26 -0.3
2,703,876 - Dsui_2551 0.39 -0.0
2,703,946 - Dsui_2551 0.63 +0.5
2,703,955 + Dsui_2551 0.66 -1.8
2,703,955 + Dsui_2551 0.66 -2.4
2,703,955 + Dsui_2551 0.66 -0.8
2,703,963 - Dsui_2551 0.68 +0.9
2,703,963 - Dsui_2551 0.68 +0.3
2,704,040 + -1.1
2,704,048 - +2.4
2,704,065 - -2.4
2,704,065 - -3.1
2,704,065 - +0.5
2,704,145 - +0.1
2,704,248 + -0.8
2,704,606 - -1.8
2,704,815 + Dsui_2553 0.29 +1.2
2,704,855 + Dsui_2553 0.33 -1.8
2,704,864 - Dsui_2553 0.34 -2.5
2,704,869 - Dsui_2553 0.34 -1.4
2,705,024 - Dsui_2553 0.48 -1.5
2,705,077 + Dsui_2553 0.53 -2.6
2,705,335 + Dsui_2553 0.77 +0.2
2,705,527 - -2.6
2,705,577 + +3.2
2,705,680 - -1.8
2,705,681 - +0.2
2,705,753 - Dsui_2554 0.16 -1.9
2,705,824 + Dsui_2554 0.43 -1.5
2,705,894 + Dsui_2554 0.70 -0.6
2,705,939 + -0.4
2,706,007 + Dsui_2555 0.19 -1.8
2,706,015 - Dsui_2555 0.23 +1.0
2,706,043 - Dsui_2555 0.37 -0.7
2,706,146 - Dsui_2555 0.89 -0.4
2,706,170 + -0.5
2,706,516 - Dsui_2556 0.24 +1.2
2,706,542 - Dsui_2556 0.26 -0.8
2,706,542 - Dsui_2556 0.26 -1.9
2,706,542 - +0.2

Or see this region's nucleotide sequence