Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_2001 and Dsui_2002 are separated by 11 nucleotides Dsui_2002 and Dsui_2003 are separated by 302 nucleotides
Dsui_2001: Dsui_2001 - hydro-lyase, Fe-S type, tartrate/fumarate subfamily,hydro-lyase family enzyme, Fe-S type, tartrate/fumarate subfamily, at 2,107,652 to 2,109,184
_2001
Dsui_2002: Dsui_2002 - TIGR00645 family protein, at 2,109,196 to 2,109,720
_2002
Dsui_2003: Dsui_2003 - acetate--CoA ligase, at 2,110,023 to 2,111,999
_2003
Position (kb)
2109
2110 Strain fitness (log2 ratio)
-3
-2
-1
0
1
2
3
4 at 2109.202 kb on - strand at 2109.207 kb on - strand at 2109.214 kb on - strand at 2109.214 kb on - strand at 2109.221 kb on - strand at 2109.306 kb on - strand, within Dsui_2002 at 2109.338 kb on + strand at 2109.346 kb on - strand, within Dsui_2002 at 2109.559 kb on - strand, within Dsui_2002 at 2109.581 kb on + strand, within Dsui_2002 at 2109.592 kb on + strand, within Dsui_2002 at 2109.642 kb on + strand at 2109.642 kb on + strand at 2109.642 kb on + strand, within Dsui_2002 at 2109.650 kb on - strand, within Dsui_2002 at 2109.650 kb on - strand, within Dsui_2002 at 2109.655 kb on - strand, within Dsui_2002 at 2109.684 kb on - strand at 2109.747 kb on - strand at 2109.756 kb on - strand at 2109.814 kb on + strand at 2109.814 kb on + strand at 2109.833 kb on + strand at 2109.833 kb on + strand at 2109.841 kb on - strand at 2109.841 kb on - strand at 2109.872 kb on + strand at 2109.892 kb on + strand at 2109.903 kb on + strand at 2109.961 kb on - strand at 2110.004 kb on + strand at 2110.006 kb on + strand at 2110.006 kb on + strand at 2110.011 kb on + strand at 2110.019 kb on + strand at 2110.031 kb on + strand at 2110.039 kb on - strand at 2110.059 kb on + strand at 2110.096 kb on - strand at 2110.099 kb on + strand at 2110.127 kb on + strand at 2110.199 kb on + strand at 2110.217 kb on + strand at 2110.261 kb on + strand, within Dsui_2003 at 2110.303 kb on - strand, within Dsui_2003 at 2110.320 kb on + strand, within Dsui_2003 at 2110.369 kb on + strand, within Dsui_2003 at 2110.374 kb on + strand, within Dsui_2003 at 2110.385 kb on - strand, within Dsui_2003 at 2110.387 kb on - strand, within Dsui_2003 at 2110.395 kb on + strand, within Dsui_2003 at 2110.485 kb on + strand, within Dsui_2003 at 2110.502 kb on + strand, within Dsui_2003 at 2110.607 kb on + strand, within Dsui_2003 at 2110.640 kb on - strand, within Dsui_2003 at 2110.653 kb on + strand, within Dsui_2003 at 2110.661 kb on - strand, within Dsui_2003 at 2110.661 kb on - strand, within Dsui_2003
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 2,109,202 - +0.2 2,109,207 - +1.4 2,109,214 - -0.3 2,109,214 - +2.0 2,109,221 - +0.5 2,109,306 - Dsui_2002 0.21 +0.3 2,109,338 + -1.9 2,109,346 - Dsui_2002 0.29 +1.4 2,109,559 - Dsui_2002 0.69 +1.2 2,109,581 + Dsui_2002 0.73 -0.7 2,109,592 + Dsui_2002 0.75 -1.0 2,109,642 + +1.0 2,109,642 + -2.0 2,109,642 + Dsui_2002 0.85 -1.8 2,109,650 - Dsui_2002 0.86 +2.1 2,109,650 - Dsui_2002 0.86 +0.9 2,109,655 - Dsui_2002 0.87 +0.7 2,109,684 - +0.3 2,109,747 - +4.3 2,109,756 - +1.3 2,109,814 + -3.6 2,109,814 + -2.3 2,109,833 + +1.4 2,109,833 + +1.3 2,109,841 - -1.9 2,109,841 - +0.1 2,109,872 + +0.7 2,109,892 + +1.3 2,109,903 + +0.6 2,109,961 - -1.3 2,110,004 + +1.2 2,110,006 + +0.6 2,110,006 + +0.3 2,110,011 + -0.0 2,110,019 + +0.0 2,110,031 + +1.1 2,110,039 - -1.5 2,110,059 + +0.5 2,110,096 - -1.7 2,110,099 + +1.3 2,110,127 + +0.7 2,110,199 + +1.5 2,110,217 + +0.7 2,110,261 + Dsui_2003 0.12 -0.0 2,110,303 - Dsui_2003 0.14 -2.2 2,110,320 + Dsui_2003 0.15 +0.7 2,110,369 + Dsui_2003 0.18 +0.4 2,110,374 + Dsui_2003 0.18 +1.2 2,110,385 - Dsui_2003 0.18 -2.5 2,110,387 - Dsui_2003 0.18 -1.2 2,110,395 + Dsui_2003 0.19 -0.1 2,110,485 + Dsui_2003 0.23 +0.5 2,110,502 + Dsui_2003 0.24 -0.6 2,110,607 + Dsui_2003 0.30 -0.0 2,110,640 - Dsui_2003 0.31 -1.4 2,110,653 + Dsui_2003 0.32 +1.1 2,110,661 - Dsui_2003 0.32 -0.6 2,110,661 - Dsui_2003 0.32 -0.1
Or see this region's nucleotide sequence