Strain Fitness in Dechlorosoma suillum PS around Dsui_1947

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1946 and Dsui_1947 are separated by 52 nucleotidesDsui_1947 and Dsui_1948 are separated by 10 nucleotides Dsui_1946: Dsui_1946 - putative N-acetylglucosaminyl transferase, at 2,057,965 to 2,059,134 _1946 Dsui_1947: Dsui_1947 - nucleotide sugar dehydrogenase, at 2,059,187 to 2,060,512 _1947 Dsui_1948: Dsui_1948 - dTDP-glucose 4,6-dehydratase, at 2,060,523 to 2,061,584 _1948 Position (kb) 2059 2060 2061Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 2058.271 kb on - strand, within Dsui_1946at 2058.321 kb on + strand, within Dsui_1946at 2058.377 kb on + strand, within Dsui_1946at 2058.433 kb on + strand, within Dsui_1946at 2058.470 kb on - strand, within Dsui_1946at 2058.470 kb on - strand, within Dsui_1946at 2058.501 kb on + strand, within Dsui_1946at 2058.501 kb on + strand, within Dsui_1946at 2058.509 kb on - strandat 2058.638 kb on + strand, within Dsui_1946at 2058.683 kb on + strand, within Dsui_1946at 2058.739 kb on + strand, within Dsui_1946at 2058.811 kb on + strand, within Dsui_1946at 2058.856 kb on - strand, within Dsui_1946at 2058.856 kb on - strand, within Dsui_1946at 2058.936 kb on + strand, within Dsui_1946at 2059.020 kb on - strandat 2059.037 kb on + strandat 2059.037 kb on + strandat 2059.062 kb on + strandat 2059.070 kb on - strandat 2059.106 kb on - strandat 2059.133 kb on + strandat 2059.137 kb on - strandat 2059.150 kb on + strandat 2059.158 kb on - strandat 2059.158 kb on - strandat 2059.168 kb on - strandat 2059.170 kb on + strandat 2059.215 kb on + strandat 2059.215 kb on + strandat 2059.269 kb on + strandat 2060.241 kb on + strand, within Dsui_1947at 2060.303 kb on + strand, within Dsui_1947at 2060.356 kb on + strand, within Dsui_1947at 2060.415 kb on + strandat 2060.495 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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2,058,271 - Dsui_1946 0.26 -2.3
2,058,321 + Dsui_1946 0.30 +0.6
2,058,377 + Dsui_1946 0.35 +0.1
2,058,433 + Dsui_1946 0.40 +0.8
2,058,470 - Dsui_1946 0.43 +0.3
2,058,470 - Dsui_1946 0.43 -2.8
2,058,501 + Dsui_1946 0.46 +0.4
2,058,501 + Dsui_1946 0.46 +1.3
2,058,509 - -1.5
2,058,638 + Dsui_1946 0.58 +0.3
2,058,683 + Dsui_1946 0.61 +0.2
2,058,739 + Dsui_1946 0.66 +0.7
2,058,811 + Dsui_1946 0.72 +1.8
2,058,856 - Dsui_1946 0.76 -0.8
2,058,856 - Dsui_1946 0.76 -0.3
2,058,936 + Dsui_1946 0.83 +0.8
2,059,020 - -1.0
2,059,037 + +0.7
2,059,037 + -0.1
2,059,062 + +0.8
2,059,070 - -0.2
2,059,106 - -1.6
2,059,133 + +1.3
2,059,137 - -0.7
2,059,150 + +1.5
2,059,158 - +0.8
2,059,158 - -1.0
2,059,168 - -0.6
2,059,170 + +1.0
2,059,215 + +0.7
2,059,215 + -1.2
2,059,269 + +1.1
2,060,241 + Dsui_1947 0.79 -1.5
2,060,303 + Dsui_1947 0.84 -0.5
2,060,356 + Dsui_1947 0.88 -2.9
2,060,415 + -1.5
2,060,495 + -0.5

Or see this region's nucleotide sequence