Strain Fitness in Dechlorosoma suillum PS around Dsui_1803

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1801 and Dsui_1802 are separated by 121 nucleotidesDsui_1802 and Dsui_1803 are separated by 163 nucleotidesDsui_1803 and Dsui_1804 are separated by 237 nucleotidesDsui_1804 and Dsui_1805 are separated by 14 nucleotidesDsui_1805 and Dsui_1806 are separated by 228 nucleotides Dsui_1801: Dsui_1801 - ATPase involved in chromosome partitioning, at 1,900,405 to 1,901,022 _1801 Dsui_1802: Dsui_1802 - tRNA-Met, at 1,901,144 to 1,901,220 _1802 Dsui_1803: Dsui_1803 - 16S ribosomal RNA, at 1,901,384 to 1,902,805 _1803 Dsui_1804: Dsui_1804 - tRNA-Ile, at 1,903,043 to 1,903,119 _1804 Dsui_1805: Dsui_1805 - tRNA-Ala, at 1,903,134 to 1,903,209 _1805 Dsui_1806: Dsui_1806 - 23S ribosomal RNA, at 1,903,438 to 1,906,319 _1806 Position (kb) 1901 1902 1903Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1900.396 kb on + strandat 1900.396 kb on + strandat 1900.399 kb on - strandat 1900.409 kb on + strandat 1900.428 kb on + strandat 1900.439 kb on + strandat 1900.456 kb on - strandat 1900.486 kb on + strand, within Dsui_1801at 1900.486 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.499 kb on + strand, within Dsui_1801at 1900.544 kb on + strand, within Dsui_1801at 1900.573 kb on + strand, within Dsui_1801at 1900.660 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.667 kb on + strand, within Dsui_1801at 1900.675 kb on - strand, within Dsui_1801at 1900.675 kb on - strand, within Dsui_1801at 1900.685 kb on + strand, within Dsui_1801at 1900.704 kb on + strand, within Dsui_1801at 1900.705 kb on - strand, within Dsui_1801at 1900.761 kb on - strand, within Dsui_1801at 1900.899 kb on + strand, within Dsui_1801at 1900.906 kb on + strand, within Dsui_1801at 1900.906 kb on + strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.914 kb on - strand, within Dsui_1801at 1900.916 kb on + strand, within Dsui_1801at 1900.916 kb on + strand, within Dsui_1801at 1900.923 kb on + strand, within Dsui_1801at 1900.968 kb on + strandat 1900.979 kb on + strandat 1901.019 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,900,396 + +0.5
1,900,396 + +0.5
1,900,399 - -3.4
1,900,409 + -1.2
1,900,428 + +0.5
1,900,439 + +1.6
1,900,456 - -1.4
1,900,486 + Dsui_1801 0.13 +0.8
1,900,486 + Dsui_1801 0.13 +0.1
1,900,499 + Dsui_1801 0.15 -1.0
1,900,499 + Dsui_1801 0.15 +0.6
1,900,499 + Dsui_1801 0.15 +0.1
1,900,499 + Dsui_1801 0.15 +0.4
1,900,499 + Dsui_1801 0.15 +0.5
1,900,499 + Dsui_1801 0.15 -0.4
1,900,544 + Dsui_1801 0.22 +0.3
1,900,573 + Dsui_1801 0.27 +0.1
1,900,660 + Dsui_1801 0.41 -0.1
1,900,667 + Dsui_1801 0.42 +0.5
1,900,667 + Dsui_1801 0.42 +0.6
1,900,667 + Dsui_1801 0.42 +0.8
1,900,667 + Dsui_1801 0.42 +0.5
1,900,667 + Dsui_1801 0.42 -0.4
1,900,675 - Dsui_1801 0.44 -3.5
1,900,675 - Dsui_1801 0.44 -0.4
1,900,685 + Dsui_1801 0.45 -0.1
1,900,704 + Dsui_1801 0.48 -1.9
1,900,705 - Dsui_1801 0.49 +0.4
1,900,761 - Dsui_1801 0.58 -3.4
1,900,899 + Dsui_1801 0.80 +0.0
1,900,906 + Dsui_1801 0.81 +0.2
1,900,906 + Dsui_1801 0.81 +0.8
1,900,914 - Dsui_1801 0.82 -2.2
1,900,914 - Dsui_1801 0.82 -2.4
1,900,914 - Dsui_1801 0.82 -4.1
1,900,914 - Dsui_1801 0.82 +1.0
1,900,916 + Dsui_1801 0.83 +0.4
1,900,916 + Dsui_1801 0.83 +0.3
1,900,923 + Dsui_1801 0.84 +1.0
1,900,968 + -0.1
1,900,979 + -0.3
1,901,019 - -1.8

Or see this region's nucleotide sequence