Strain Fitness in Dechlorosoma suillum PS around Dsui_1798

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1796 and Dsui_1797 are separated by 77 nucleotidesDsui_1797 and Dsui_1798 are separated by 29 nucleotides Dsui_1796: Dsui_1796 - phage/plasmid-related protein TIGR03299, at 1,895,646 to 1,896,614 _1796 Dsui_1797: Dsui_1797 - putative phage-type endonuclease, at 1,896,692 to 1,897,264 _1797 Dsui_1798: Dsui_1798 - DNA replication protein, at 1,897,294 to 1,898,028 _1798 Position (kb) 1897 1898 1899Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 1896.336 kb on - strand, within Dsui_1796at 1896.404 kb on + strand, within Dsui_1796at 1896.422 kb on - strand, within Dsui_1796at 1896.423 kb on + strandat 1896.484 kb on - strandat 1896.484 kb on - strand, within Dsui_1796at 1896.587 kb on - strandat 1896.594 kb on + strandat 1896.600 kb on - strandat 1896.657 kb on - strandat 1896.669 kb on + strandat 1896.714 kb on - strandat 1896.722 kb on + strandat 1896.736 kb on - strandat 1896.774 kb on - strand, within Dsui_1797at 1896.801 kb on + strandat 1896.825 kb on - strandat 1896.834 kb on + strandat 1896.842 kb on - strand, within Dsui_1797at 1896.898 kb on + strand, within Dsui_1797at 1896.906 kb on - strand, within Dsui_1797at 1896.937 kb on + strandat 1896.947 kb on - strand, within Dsui_1797at 1896.948 kb on + strand, within Dsui_1797at 1896.983 kb on - strand, within Dsui_1797at 1897.014 kb on - strand, within Dsui_1797at 1897.042 kb on + strandat 1897.050 kb on - strand, within Dsui_1797at 1897.099 kb on - strand, within Dsui_1797at 1897.136 kb on - strand, within Dsui_1797at 1897.233 kb on + strandat 1897.241 kb on - strandat 1897.266 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,896,336 - Dsui_1796 0.71 -2.1
1,896,404 + Dsui_1796 0.78 -0.5
1,896,422 - Dsui_1796 0.80 -3.2
1,896,423 + -3.0
1,896,484 - -1.9
1,896,484 - Dsui_1796 0.86 +0.7
1,896,587 - +1.5
1,896,594 + +0.8
1,896,600 - -3.0
1,896,657 - -3.6
1,896,669 + -0.5
1,896,714 - -1.5
1,896,722 + -0.9
1,896,736 - -1.1
1,896,774 - Dsui_1797 0.14 -2.6
1,896,801 + -2.6
1,896,825 - -1.8
1,896,834 + -1.8
1,896,842 - Dsui_1797 0.26 -1.0
1,896,898 + Dsui_1797 0.36 +0.0
1,896,906 - Dsui_1797 0.37 -1.6
1,896,937 + -1.8
1,896,947 - Dsui_1797 0.45 -0.3
1,896,948 + Dsui_1797 0.45 -0.2
1,896,983 - Dsui_1797 0.51 -0.3
1,897,014 - Dsui_1797 0.56 -3.8
1,897,042 + -1.5
1,897,050 - Dsui_1797 0.62 -3.5
1,897,099 - Dsui_1797 0.71 -1.2
1,897,136 - Dsui_1797 0.77 -1.0
1,897,233 + +0.5
1,897,241 - -0.7
1,897,266 - -0.6

Or see this region's nucleotide sequence