Strain Fitness in Dechlorosoma suillum PS around Dsui_1747

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1745 and Dsui_1746 overlap by 4 nucleotidesDsui_1746 and Dsui_1747 overlap by 4 nucleotidesDsui_1747 and Dsui_1748 are separated by 202 nucleotidesDsui_1748 and Dsui_1749 overlap by 8 nucleotides Dsui_1745: Dsui_1745 - flagellar biosynthetic protein FliQ, at 1,833,840 to 1,834,109 _1745 Dsui_1746: Dsui_1746 - flagellar biosynthetic protein FliP, at 1,834,106 to 1,834,858 _1746 Dsui_1747: Dsui_1747 - flagellar biosynthetic protein FliO, at 1,834,855 to 1,835,253 _1747 Dsui_1748: Dsui_1748 - flagellar motor switch protein FliN, at 1,835,456 to 1,835,893 _1748 Dsui_1749: Dsui_1749 - flagellar motor switch protein FliM, at 1,835,886 to 1,836,890 _1749 Position (kb) 1834 1835 1836Strain fitness (log2 ratio) -2 -1 0 1 2at 1833.897 kb on - strand, within Dsui_1745at 1833.965 kb on + strand, within Dsui_1745at 1834.037 kb on + strand, within Dsui_1745at 1834.064 kb on + strand, within Dsui_1745at 1834.160 kb on - strandat 1834.179 kb on - strandat 1834.345 kb on + strand, within Dsui_1746at 1834.353 kb on - strand, within Dsui_1746at 1834.515 kb on + strand, within Dsui_1746at 1834.515 kb on + strand, within Dsui_1746at 1834.515 kb on + strand, within Dsui_1746at 1834.523 kb on - strand, within Dsui_1746at 1834.523 kb on - strand, within Dsui_1746at 1834.523 kb on - strand, within Dsui_1746at 1834.726 kb on + strand, within Dsui_1746at 1834.728 kb on + strand, within Dsui_1746at 1834.734 kb on - strand, within Dsui_1746at 1834.736 kb on - strand, within Dsui_1746at 1834.785 kb on + strandat 1834.785 kb on + strandat 1834.789 kb on + strandat 1834.888 kb on - strandat 1834.916 kb on + strand, within Dsui_1747at 1834.937 kb on + strand, within Dsui_1747at 1834.945 kb on - strand, within Dsui_1747at 1834.971 kb on - strand, within Dsui_1747at 1835.096 kb on - strand, within Dsui_1747at 1835.173 kb on + strand, within Dsui_1747at 1835.188 kb on + strand, within Dsui_1747at 1835.208 kb on - strand, within Dsui_1747at 1835.222 kb on + strandat 1835.232 kb on + strandat 1835.304 kb on - strandat 1835.359 kb on + strandat 1835.372 kb on + strandat 1835.372 kb on + strandat 1835.372 kb on + strandat 1835.380 kb on - strandat 1835.567 kb on + strand, within Dsui_1748at 1835.576 kb on + strand, within Dsui_1748at 1835.621 kb on - strand, within Dsui_1748at 1835.663 kb on + strand, within Dsui_1748at 1835.693 kb on + strand, within Dsui_1748at 1835.693 kb on - strand, within Dsui_1748at 1835.734 kb on - strand, within Dsui_1748at 1835.870 kb on - strandat 1835.889 kb on + strandat 1835.911 kb on + strandat 1835.911 kb on + strandat 1835.939 kb on + strandat 1836.023 kb on - strand, within Dsui_1749at 1836.071 kb on - strand, within Dsui_1749at 1836.091 kb on + strand, within Dsui_1749at 1836.196 kb on + strand, within Dsui_1749at 1836.196 kb on + strand, within Dsui_1749at 1836.201 kb on - strand, within Dsui_1749at 1836.204 kb on - strand, within Dsui_1749at 1836.204 kb on - strand, within Dsui_1749at 1836.232 kb on - strand, within Dsui_1749

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,833,897 - Dsui_1745 0.21 +0.7
1,833,965 + Dsui_1745 0.46 -0.3
1,834,037 + Dsui_1745 0.73 +0.6
1,834,064 + Dsui_1745 0.83 +0.2
1,834,160 - +1.0
1,834,179 - +1.0
1,834,345 + Dsui_1746 0.32 +0.6
1,834,353 - Dsui_1746 0.33 +0.2
1,834,515 + Dsui_1746 0.54 +0.9
1,834,515 + Dsui_1746 0.54 +0.4
1,834,515 + Dsui_1746 0.54 -0.9
1,834,523 - Dsui_1746 0.55 +1.2
1,834,523 - Dsui_1746 0.55 +0.7
1,834,523 - Dsui_1746 0.55 +0.3
1,834,726 + Dsui_1746 0.82 -1.4
1,834,728 + Dsui_1746 0.83 -1.0
1,834,734 - Dsui_1746 0.83 +0.8
1,834,736 - Dsui_1746 0.84 +0.9
1,834,785 + +0.1
1,834,785 + -0.6
1,834,789 + -0.6
1,834,888 - +1.0
1,834,916 + Dsui_1747 0.15 -0.6
1,834,937 + Dsui_1747 0.21 -0.1
1,834,945 - Dsui_1747 0.23 +1.1
1,834,971 - Dsui_1747 0.29 +0.9
1,835,096 - Dsui_1747 0.60 +0.9
1,835,173 + Dsui_1747 0.80 +1.7
1,835,188 + Dsui_1747 0.83 -0.4
1,835,208 - Dsui_1747 0.88 +1.6
1,835,222 + -0.6
1,835,232 + -1.0
1,835,304 - +0.3
1,835,359 + +0.1
1,835,372 + -0.9
1,835,372 + +0.6
1,835,372 + -1.5
1,835,380 - +0.4
1,835,567 + Dsui_1748 0.25 -1.1
1,835,576 + Dsui_1748 0.27 +0.4
1,835,621 - Dsui_1748 0.38 +0.4
1,835,663 + Dsui_1748 0.47 +0.5
1,835,693 + Dsui_1748 0.54 -0.2
1,835,693 - Dsui_1748 0.54 +1.2
1,835,734 - Dsui_1748 0.63 +0.9
1,835,870 - +0.8
1,835,889 + -1.0
1,835,911 + -0.4
1,835,911 + -2.3
1,835,939 + -1.8
1,836,023 - Dsui_1749 0.14 +0.7
1,836,071 - Dsui_1749 0.18 +2.0
1,836,091 + Dsui_1749 0.20 -0.2
1,836,196 + Dsui_1749 0.31 +0.3
1,836,196 + Dsui_1749 0.31 +2.6
1,836,201 - Dsui_1749 0.31 +0.6
1,836,204 - Dsui_1749 0.32 +1.1
1,836,204 - Dsui_1749 0.32 -0.5
1,836,232 - Dsui_1749 0.34 +1.3

Or see this region's nucleotide sequence