Strain Fitness in Dechlorosoma suillum PS around Dsui_1572

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1570 and Dsui_1571 are separated by 99 nucleotidesDsui_1571 and Dsui_1572 are separated by 83 nucleotidesDsui_1572 and Dsui_1573 are separated by 141 nucleotidesDsui_1573 and Dsui_1574 are separated by 82 nucleotides Dsui_1570: Dsui_1570 - amino-acid N-acetyltransferase, at 1,643,087 to 1,644,433 _1570 Dsui_1571: Dsui_1571 - Fe-S cluster protector protein, at 1,644,533 to 1,644,805 _1571 Dsui_1572: Dsui_1572 - hypothetical protein, at 1,644,889 to 1,645,296 _1572 Dsui_1573: Dsui_1573 - phosphate transport system regulatory protein PhoU, at 1,645,438 to 1,646,148 _1573 Dsui_1574: Dsui_1574 - ribose 5-phosphate isomerase, at 1,646,231 to 1,646,902 _1574 Position (kb) 1644 1645 1646Strain fitness (log2 ratio) -1 0 1at 1644.412 kb on + strandat 1644.477 kb on + strandat 1644.490 kb on - strandat 1644.775 kb on + strand, within Dsui_1571at 1644.775 kb on + strand, within Dsui_1571at 1644.783 kb on - strandat 1644.783 kb on - strandat 1644.789 kb on - strandat 1644.794 kb on + strandat 1644.921 kb on + strandat 1645.013 kb on - strand, within Dsui_1572at 1645.071 kb on + strand, within Dsui_1572at 1645.071 kb on + strand, within Dsui_1572at 1645.129 kb on - strand, within Dsui_1572at 1645.186 kb on + strand, within Dsui_1572at 1645.194 kb on - strandat 1645.216 kb on - strand, within Dsui_1572at 1645.408 kb on + strandat 1646.174 kb on - strandat 1646.236 kb on + strandat 1646.254 kb on + strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,644,412 + +0.8
1,644,477 + +0.4
1,644,490 - +0.3
1,644,775 + Dsui_1571 0.89 +0.8
1,644,775 + Dsui_1571 0.89 +0.4
1,644,783 - +1.2
1,644,783 - -0.3
1,644,789 - -0.5
1,644,794 + -0.6
1,644,921 + +0.8
1,645,013 - Dsui_1572 0.30 +0.5
1,645,071 + Dsui_1572 0.45 +1.4
1,645,071 + Dsui_1572 0.45 +0.8
1,645,129 - Dsui_1572 0.59 +1.0
1,645,186 + Dsui_1572 0.73 +1.6
1,645,194 - +0.3
1,645,216 - Dsui_1572 0.80 +0.6
1,645,408 + +0.4
1,646,174 - +1.1
1,646,236 + +0.1
1,646,254 + +0.1

Or see this region's nucleotide sequence