Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_1074 and Dsui_1075 are separated by 19 nucleotides Dsui_1075 and Dsui_1076 are separated by 66 nucleotides Dsui_1076 and Dsui_1077 are separated by 104 nucleotides
Dsui_1074: Dsui_1074 - heavy metal efflux pump, cobalt-zinc-cadmium, at 1,107,711 to 1,110,845
_1074
Dsui_1075: Dsui_1075 - hypothetical protein, at 1,110,865 to 1,111,266
_1075
Dsui_1076: Dsui_1076 - copper/silver-translocating P-type ATPase, at 1,111,333 to 1,113,615
_1076
Dsui_1077: Dsui_1077 - hypothetical protein, at 1,113,720 to 1,113,974
_1077
Position (kb)
1111
1112
1113
1114 Strain fitness (log2 ratio)
-4
-3
-2
-1
0
1
2 at 1110.413 kb on + strand, within Dsui_1074 at 1110.413 kb on + strand, within Dsui_1074 at 1110.421 kb on - strand, within Dsui_1074 at 1110.421 kb on - strand, within Dsui_1074 at 1110.421 kb on - strand, within Dsui_1074 at 1110.422 kb on + strand, within Dsui_1074 at 1110.429 kb on - strand, within Dsui_1074 at 1110.430 kb on - strand, within Dsui_1074 at 1110.483 kb on - strand, within Dsui_1074 at 1110.524 kb on + strand, within Dsui_1074 at 1110.537 kb on - strand at 1110.549 kb on - strand at 1110.557 kb on - strand at 1110.559 kb on - strand at 1110.563 kb on + strand at 1110.591 kb on - strand at 1110.717 kb on - strand at 1110.769 kb on + strand at 1110.963 kb on - strand, within Dsui_1075 at 1110.970 kb on - strand, within Dsui_1075 at 1110.973 kb on + strand, within Dsui_1075 at 1111.024 kb on - strand, within Dsui_1075 at 1111.062 kb on + strand, within Dsui_1075 at 1111.070 kb on - strand, within Dsui_1075 at 1111.070 kb on - strand, within Dsui_1075 at 1111.106 kb on + strand, within Dsui_1075 at 1111.148 kb on - strand, within Dsui_1075 at 1111.239 kb on + strand at 1111.263 kb on - strand at 1111.287 kb on + strand at 1111.296 kb on + strand at 1111.296 kb on + strand at 1111.296 kb on + strand at 1111.304 kb on - strand at 1111.322 kb on - strand at 1111.333 kb on - strand at 1111.379 kb on + strand at 1111.507 kb on + strand at 1111.507 kb on + strand at 1111.507 kb on + strand at 1111.515 kb on - strand at 1111.515 kb on - strand at 1111.542 kb on + strand at 1111.599 kb on + strand, within Dsui_1076 at 1111.666 kb on - strand, within Dsui_1076 at 1111.682 kb on - strand, within Dsui_1076 at 1111.729 kb on + strand, within Dsui_1076 at 1111.749 kb on + strand, within Dsui_1076 at 1111.807 kb on - strand, within Dsui_1076 at 1111.817 kb on - strand, within Dsui_1076 at 1111.891 kb on + strand, within Dsui_1076 at 1111.894 kb on - strand, within Dsui_1076 at 1111.935 kb on - strand, within Dsui_1076 at 1111.945 kb on - strand, within Dsui_1076 at 1111.958 kb on + strand, within Dsui_1076 at 1112.025 kb on - strand, within Dsui_1076 at 1112.032 kb on - strand, within Dsui_1076 at 1112.042 kb on - strand, within Dsui_1076 at 1112.042 kb on - strand, within Dsui_1076 at 1112.095 kb on + strand, within Dsui_1076 at 1112.127 kb on + strand, within Dsui_1076 at 1112.129 kb on + strand, within Dsui_1076 at 1112.143 kb on - strand, within Dsui_1076 at 1112.171 kb on + strand, within Dsui_1076 at 1112.179 kb on - strand, within Dsui_1076 at 1112.255 kb on - strand, within Dsui_1076 at 1112.282 kb on + strand, within Dsui_1076 at 1112.289 kb on - strand, within Dsui_1076 at 1112.313 kb on + strand, within Dsui_1076 at 1112.334 kb on + strand, within Dsui_1076 at 1112.334 kb on + strand, within Dsui_1076 at 1112.386 kb on - strand, within Dsui_1076 at 1112.388 kb on + strand, within Dsui_1076 at 1112.398 kb on + strand, within Dsui_1076 at 1112.493 kb on - strand, within Dsui_1076 at 1112.502 kb on + strand, within Dsui_1076 at 1112.502 kb on + strand, within Dsui_1076 at 1112.537 kb on + strand, within Dsui_1076 at 1112.545 kb on - strand, within Dsui_1076 at 1112.550 kb on - strand, within Dsui_1076 at 1112.578 kb on + strand, within Dsui_1076 at 1112.583 kb on + strand, within Dsui_1076 at 1112.645 kb on - strand, within Dsui_1076 at 1112.694 kb on + strand, within Dsui_1076 at 1112.721 kb on + strand, within Dsui_1076 at 1112.770 kb on - strand, within Dsui_1076 at 1112.770 kb on - strand, within Dsui_1076 at 1112.812 kb on + strand, within Dsui_1076 at 1112.825 kb on + strand, within Dsui_1076 at 1112.905 kb on + strand, within Dsui_1076 at 1112.923 kb on - strand, within Dsui_1076 at 1112.928 kb on - strand, within Dsui_1076 at 1112.939 kb on + strand, within Dsui_1076 at 1112.947 kb on - strand, within Dsui_1076 at 1112.947 kb on - strand, within Dsui_1076 at 1112.952 kb on + strand, within Dsui_1076 at 1112.960 kb on - strand, within Dsui_1076 at 1112.985 kb on + strand, within Dsui_1076 at 1113.076 kb on - strand, within Dsui_1076 at 1113.278 kb on + strand, within Dsui_1076 at 1113.288 kb on + strand, within Dsui_1076 at 1113.288 kb on + strand, within Dsui_1076 at 1113.288 kb on + strand, within Dsui_1076 at 1113.288 kb on + strand, within Dsui_1076 at 1113.291 kb on - strand, within Dsui_1076 at 1113.301 kb on - strand, within Dsui_1076 at 1113.307 kb on - strand, within Dsui_1076 at 1113.323 kb on + strand, within Dsui_1076 at 1113.327 kb on + strand, within Dsui_1076 at 1113.327 kb on + strand, within Dsui_1076 at 1113.331 kb on - strand, within Dsui_1076 at 1113.351 kb on + strand, within Dsui_1076 at 1113.359 kb on - strand, within Dsui_1076 at 1113.380 kb on + strand, within Dsui_1076 at 1113.388 kb on - strand at 1113.399 kb on + strand at 1113.407 kb on - strand at 1113.407 kb on - strand at 1113.434 kb on + strand at 1113.453 kb on + strand at 1113.460 kb on + strand at 1113.461 kb on - strand at 1113.467 kb on - strand at 1113.467 kb on - strand at 1113.505 kb on + strand at 1113.546 kb on + strand at 1113.554 kb on - strand at 1113.575 kb on + strand at 1113.575 kb on - strand at 1113.575 kb on - strand at 1113.583 kb on - strand at 1113.659 kb on + strand at 1113.752 kb on + strand, within Dsui_1077 at 1113.798 kb on + strand, within Dsui_1077 at 1113.800 kb on - strand, within Dsui_1077 at 1113.834 kb on + strand, within Dsui_1077 at 1113.863 kb on + strand, within Dsui_1077 at 1113.871 kb on - strand, within Dsui_1077 at 1113.905 kb on + strand, within Dsui_1077 at 1113.918 kb on - strand, within Dsui_1077 at 1113.983 kb on + strand at 1113.983 kb on + strand at 1113.983 kb on + strand at 1113.983 kb on + strand at 1113.983 kb on + strand at 1113.983 kb on + strand at 1113.993 kb on + strand at 1114.048 kb on + strand at 1114.048 kb on + strand at 1114.062 kb on + strand at 1114.079 kb on + strand at 1114.132 kb on - strand at 1114.132 kb on - strand at 1114.132 kb on - strand at 1114.132 kb on - strand at 1114.135 kb on + strand at 1114.148 kb on - strand at 1114.164 kb on + strand at 1114.164 kb on + strand at 1114.187 kb on + strand at 1114.187 kb on + strand at 1114.195 kb on - strand at 1114.231 kb on + strand at 1114.263 kb on - strand at 1114.287 kb on + strand at 1114.287 kb on - strand at 1114.314 kb on + strand at 1114.314 kb on + strand at 1114.328 kb on - strand at 1114.375 kb on + strand at 1114.419 kb on - strand at 1114.424 kb on + strand at 1114.461 kb on + strand at 1114.461 kb on + strand at 1114.464 kb on - strand at 1114.469 kb on - strand at 1114.474 kb on - strand at 1114.484 kb on + strand at 1114.492 kb on - strand at 1114.502 kb on + strand at 1114.502 kb on + strand at 1114.505 kb on - strand at 1114.510 kb on - strand at 1114.512 kb on + strand at 1114.520 kb on - strand at 1114.520 kb on - strand at 1114.520 kb on - strand at 1114.520 kb on - strand at 1114.521 kb on - strand at 1114.522 kb on + strand at 1114.523 kb on + strand at 1114.523 kb on + strand at 1114.523 kb on + strand at 1114.523 kb on + strand at 1114.531 kb on - strand at 1114.541 kb on - strand at 1114.542 kb on + strand at 1114.552 kb on - strand at 1114.562 kb on - strand at 1114.567 kb on - strand at 1114.569 kb on + strand at 1114.569 kb on + strand at 1114.577 kb on - strand at 1114.590 kb on + strand at 1114.593 kb on - strand at 1114.600 kb on + strand at 1114.600 kb on + strand at 1114.600 kb on + strand at 1114.600 kb on + strand at 1114.608 kb on - strand at 1114.608 kb on - strand at 1114.610 kb on + strand at 1114.612 kb on + strand at 1114.613 kb on - strand
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 1,110,413 + Dsui_1074 0.86 -0.1 1,110,413 + Dsui_1074 0.86 +0.2 1,110,421 - Dsui_1074 0.86 +0.9 1,110,421 - Dsui_1074 0.86 -1.7 1,110,421 - Dsui_1074 0.86 +0.1 1,110,422 + Dsui_1074 0.86 +0.2 1,110,429 - Dsui_1074 0.87 -0.5 1,110,430 - Dsui_1074 0.87 +0.4 1,110,483 - Dsui_1074 0.88 -0.2 1,110,524 + Dsui_1074 0.90 +0.6 1,110,537 - -1.2 1,110,549 - -2.8 1,110,557 - +0.7 1,110,559 - +0.0 1,110,563 + +2.4 1,110,591 - +0.1 1,110,717 - -1.0 1,110,769 + -0.3 1,110,963 - Dsui_1075 0.24 +0.1 1,110,970 - Dsui_1075 0.26 -2.2 1,110,973 + Dsui_1075 0.27 -0.6 1,111,024 - Dsui_1075 0.40 -0.4 1,111,062 + Dsui_1075 0.49 +0.3 1,111,070 - Dsui_1075 0.51 +0.0 1,111,070 - Dsui_1075 0.51 -0.1 1,111,106 + Dsui_1075 0.60 +0.0 1,111,148 - Dsui_1075 0.70 -0.9 1,111,239 + +0.7 1,111,263 - +0.5 1,111,287 + +0.1 1,111,296 + +0.3 1,111,296 + -0.4 1,111,296 + -0.3 1,111,304 - -0.2 1,111,322 - -1.3 1,111,333 - -1.0 1,111,379 + -0.0 1,111,507 + +1.5 1,111,507 + -0.2 1,111,507 + -0.6 1,111,515 - +0.3 1,111,515 - +0.4 1,111,542 + -0.2 1,111,599 + Dsui_1076 0.12 -1.4 1,111,666 - Dsui_1076 0.15 -1.4 1,111,682 - Dsui_1076 0.15 -1.8 1,111,729 + Dsui_1076 0.17 +0.1 1,111,749 + Dsui_1076 0.18 -0.9 1,111,807 - Dsui_1076 0.21 -1.8 1,111,817 - Dsui_1076 0.21 -0.8 1,111,891 + Dsui_1076 0.24 +1.1 1,111,894 - Dsui_1076 0.25 -2.7 1,111,935 - Dsui_1076 0.26 -0.3 1,111,945 - Dsui_1076 0.27 -1.3 1,111,958 + Dsui_1076 0.27 +0.5 1,112,025 - Dsui_1076 0.30 -0.3 1,112,032 - Dsui_1076 0.31 -0.5 1,112,042 - Dsui_1076 0.31 -1.3 1,112,042 - Dsui_1076 0.31 -0.1 1,112,095 + Dsui_1076 0.33 -1.3 1,112,127 + Dsui_1076 0.35 +0.1 1,112,129 + Dsui_1076 0.35 -0.7 1,112,143 - Dsui_1076 0.35 -1.5 1,112,171 + Dsui_1076 0.37 -1.5 1,112,179 - Dsui_1076 0.37 +0.0 1,112,255 - Dsui_1076 0.40 -1.3 1,112,282 + Dsui_1076 0.42 -0.3 1,112,289 - Dsui_1076 0.42 -0.9 1,112,313 + Dsui_1076 0.43 -0.6 1,112,334 + Dsui_1076 0.44 -0.2 1,112,334 + Dsui_1076 0.44 +0.3 1,112,386 - Dsui_1076 0.46 -0.4 1,112,388 + Dsui_1076 0.46 +0.2 1,112,398 + Dsui_1076 0.47 -0.9 1,112,493 - Dsui_1076 0.51 +0.5 1,112,502 + Dsui_1076 0.51 +0.4 1,112,502 + Dsui_1076 0.51 +0.5 1,112,537 + Dsui_1076 0.53 -0.0 1,112,545 - Dsui_1076 0.53 -0.0 1,112,550 - Dsui_1076 0.53 +0.5 1,112,578 + Dsui_1076 0.55 -0.4 1,112,583 + Dsui_1076 0.55 -0.5 1,112,645 - Dsui_1076 0.57 -0.3 1,112,694 + Dsui_1076 0.60 +0.1 1,112,721 + Dsui_1076 0.61 +0.4 1,112,770 - Dsui_1076 0.63 +0.4 1,112,770 - Dsui_1076 0.63 -0.4 1,112,812 + Dsui_1076 0.65 +0.0 1,112,825 + Dsui_1076 0.65 +0.3 1,112,905 + Dsui_1076 0.69 -0.4 1,112,923 - Dsui_1076 0.70 -0.4 1,112,928 - Dsui_1076 0.70 -1.5 1,112,939 + Dsui_1076 0.70 +1.7 1,112,947 - Dsui_1076 0.71 -0.6 1,112,947 - Dsui_1076 0.71 +0.8 1,112,952 + Dsui_1076 0.71 +0.5 1,112,960 - Dsui_1076 0.71 +0.3 1,112,985 + Dsui_1076 0.72 +1.2 1,113,076 - Dsui_1076 0.76 -0.8 1,113,278 + Dsui_1076 0.85 +1.3 1,113,288 + Dsui_1076 0.86 +1.2 1,113,288 + Dsui_1076 0.86 +0.6 1,113,288 + Dsui_1076 0.86 -0.1 1,113,288 + Dsui_1076 0.86 -0.6 1,113,291 - Dsui_1076 0.86 +0.2 1,113,301 - Dsui_1076 0.86 +0.1 1,113,307 - Dsui_1076 0.86 +0.4 1,113,323 + Dsui_1076 0.87 -0.0 1,113,327 + Dsui_1076 0.87 +2.4 1,113,327 + Dsui_1076 0.87 -0.1 1,113,331 - Dsui_1076 0.88 -1.0 1,113,351 + Dsui_1076 0.88 -0.2 1,113,359 - Dsui_1076 0.89 +0.5 1,113,380 + Dsui_1076 0.90 +0.1 1,113,388 - -0.6 1,113,399 + +0.7 1,113,407 - +0.6 1,113,407 - -2.1 1,113,434 + +0.1 1,113,453 + +0.1 1,113,460 + -0.6 1,113,461 - +0.5 1,113,467 - -1.6 1,113,467 - +0.2 1,113,505 + +0.4 1,113,546 + +0.1 1,113,554 - -0.1 1,113,575 + +0.2 1,113,575 - -1.0 1,113,575 - -2.3 1,113,583 - -0.8 1,113,659 + -0.6 1,113,752 + Dsui_1077 0.13 +0.1 1,113,798 + Dsui_1077 0.31 +0.6 1,113,800 - Dsui_1077 0.31 -1.6 1,113,834 + Dsui_1077 0.45 -0.9 1,113,863 + Dsui_1077 0.56 +0.3 1,113,871 - Dsui_1077 0.59 +0.3 1,113,905 + Dsui_1077 0.73 +1.4 1,113,918 - Dsui_1077 0.78 +0.6 1,113,983 + +0.1 1,113,983 + +0.1 1,113,983 + -0.4 1,113,983 + -0.4 1,113,983 + +0.3 1,113,983 + +0.5 1,113,993 + +0.5 1,114,048 + -1.0 1,114,048 + -0.3 1,114,062 + +0.9 1,114,079 + +0.6 1,114,132 - -0.2 1,114,132 - +1.8 1,114,132 - -0.1 1,114,132 - +0.4 1,114,135 + -0.5 1,114,148 - -0.3 1,114,164 + +0.5 1,114,164 + -1.8 1,114,187 + +0.6 1,114,187 + +2.6 1,114,195 - -0.2 1,114,231 + +0.4 1,114,263 - -1.2 1,114,287 + +0.0 1,114,287 - +0.6 1,114,314 + +0.7 1,114,314 + +0.3 1,114,328 - +0.9 1,114,375 + +0.0 1,114,419 - +0.1 1,114,424 + +0.1 1,114,461 + -0.4 1,114,461 + +0.3 1,114,464 - +0.5 1,114,469 - +0.3 1,114,474 - -0.2 1,114,484 + -0.1 1,114,492 - +0.5 1,114,502 + -1.3 1,114,502 + -0.9 1,114,505 - -1.9 1,114,510 - -1.2 1,114,512 + +1.0 1,114,520 - -1.5 1,114,520 - +1.5 1,114,520 - +0.4 1,114,520 - -4.1 1,114,521 - +0.8 1,114,522 + -0.3 1,114,523 + -0.4 1,114,523 + -0.1 1,114,523 + +0.3 1,114,523 + -0.5 1,114,531 - +0.4 1,114,541 - -1.4 1,114,542 + +0.7 1,114,552 - -0.8 1,114,562 - -0.7 1,114,567 - +0.3 1,114,569 + -0.3 1,114,569 + +0.4 1,114,577 - +0.9 1,114,590 + +0.0 1,114,593 - +0.5 1,114,600 + +0.7 1,114,600 + +1.0 1,114,600 + +1.8 1,114,600 + +0.9 1,114,608 - -1.5 1,114,608 - +0.0 1,114,610 + -0.1 1,114,612 + +0.2 1,114,613 - -0.8
Or see this region's nucleotide sequence