Strain Fitness in Dechlorosoma suillum PS around Dsui_1076

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_1074 and Dsui_1075 are separated by 19 nucleotidesDsui_1075 and Dsui_1076 are separated by 66 nucleotidesDsui_1076 and Dsui_1077 are separated by 104 nucleotides Dsui_1074: Dsui_1074 - heavy metal efflux pump, cobalt-zinc-cadmium, at 1,107,711 to 1,110,845 _1074 Dsui_1075: Dsui_1075 - hypothetical protein, at 1,110,865 to 1,111,266 _1075 Dsui_1076: Dsui_1076 - copper/silver-translocating P-type ATPase, at 1,111,333 to 1,113,615 _1076 Dsui_1077: Dsui_1077 - hypothetical protein, at 1,113,720 to 1,113,974 _1077 Position (kb) 1111 1112 1113 1114Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2at 1110.413 kb on + strand, within Dsui_1074at 1110.413 kb on + strand, within Dsui_1074at 1110.421 kb on - strand, within Dsui_1074at 1110.421 kb on - strand, within Dsui_1074at 1110.421 kb on - strand, within Dsui_1074at 1110.422 kb on + strand, within Dsui_1074at 1110.429 kb on - strand, within Dsui_1074at 1110.430 kb on - strand, within Dsui_1074at 1110.483 kb on - strand, within Dsui_1074at 1110.524 kb on + strand, within Dsui_1074at 1110.537 kb on - strandat 1110.549 kb on - strandat 1110.557 kb on - strandat 1110.559 kb on - strandat 1110.563 kb on + strandat 1110.591 kb on - strandat 1110.717 kb on - strandat 1110.769 kb on + strandat 1110.963 kb on - strand, within Dsui_1075at 1110.970 kb on - strand, within Dsui_1075at 1110.973 kb on + strand, within Dsui_1075at 1111.024 kb on - strand, within Dsui_1075at 1111.062 kb on + strand, within Dsui_1075at 1111.070 kb on - strand, within Dsui_1075at 1111.070 kb on - strand, within Dsui_1075at 1111.106 kb on + strand, within Dsui_1075at 1111.148 kb on - strand, within Dsui_1075at 1111.239 kb on + strandat 1111.263 kb on - strandat 1111.287 kb on + strandat 1111.296 kb on + strandat 1111.296 kb on + strandat 1111.296 kb on + strandat 1111.304 kb on - strandat 1111.322 kb on - strandat 1111.333 kb on - strandat 1111.379 kb on + strandat 1111.507 kb on + strandat 1111.507 kb on + strandat 1111.507 kb on + strandat 1111.515 kb on - strandat 1111.515 kb on - strandat 1111.542 kb on + strandat 1111.599 kb on + strand, within Dsui_1076at 1111.666 kb on - strand, within Dsui_1076at 1111.682 kb on - strand, within Dsui_1076at 1111.729 kb on + strand, within Dsui_1076at 1111.749 kb on + strand, within Dsui_1076at 1111.807 kb on - strand, within Dsui_1076at 1111.817 kb on - strand, within Dsui_1076at 1111.891 kb on + strand, within Dsui_1076at 1111.894 kb on - strand, within Dsui_1076at 1111.935 kb on - strand, within Dsui_1076at 1111.945 kb on - strand, within Dsui_1076at 1111.958 kb on + strand, within Dsui_1076at 1112.025 kb on - strand, within Dsui_1076at 1112.032 kb on - strand, within Dsui_1076at 1112.042 kb on - strand, within Dsui_1076at 1112.042 kb on - strand, within Dsui_1076at 1112.095 kb on + strand, within Dsui_1076at 1112.127 kb on + strand, within Dsui_1076at 1112.129 kb on + strand, within Dsui_1076at 1112.143 kb on - strand, within Dsui_1076at 1112.171 kb on + strand, within Dsui_1076at 1112.179 kb on - strand, within Dsui_1076at 1112.255 kb on - strand, within Dsui_1076at 1112.282 kb on + strand, within Dsui_1076at 1112.289 kb on - strand, within Dsui_1076at 1112.313 kb on + strand, within Dsui_1076at 1112.334 kb on + strand, within Dsui_1076at 1112.334 kb on + strand, within Dsui_1076at 1112.386 kb on - strand, within Dsui_1076at 1112.388 kb on + strand, within Dsui_1076at 1112.398 kb on + strand, within Dsui_1076at 1112.493 kb on - strand, within Dsui_1076at 1112.502 kb on + strand, within Dsui_1076at 1112.502 kb on + strand, within Dsui_1076at 1112.537 kb on + strand, within Dsui_1076at 1112.545 kb on - strand, within Dsui_1076at 1112.550 kb on - strand, within Dsui_1076at 1112.578 kb on + strand, within Dsui_1076at 1112.583 kb on + strand, within Dsui_1076at 1112.645 kb on - strand, within Dsui_1076at 1112.694 kb on + strand, within Dsui_1076at 1112.721 kb on + strand, within Dsui_1076at 1112.770 kb on - strand, within Dsui_1076at 1112.770 kb on - strand, within Dsui_1076at 1112.812 kb on + strand, within Dsui_1076at 1112.825 kb on + strand, within Dsui_1076at 1112.905 kb on + strand, within Dsui_1076at 1112.923 kb on - strand, within Dsui_1076at 1112.928 kb on - strand, within Dsui_1076at 1112.939 kb on + strand, within Dsui_1076at 1112.947 kb on - strand, within Dsui_1076at 1112.947 kb on - strand, within Dsui_1076at 1112.952 kb on + strand, within Dsui_1076at 1112.960 kb on - strand, within Dsui_1076at 1112.985 kb on + strand, within Dsui_1076at 1113.076 kb on - strand, within Dsui_1076at 1113.278 kb on + strand, within Dsui_1076at 1113.288 kb on + strand, within Dsui_1076at 1113.288 kb on + strand, within Dsui_1076at 1113.288 kb on + strand, within Dsui_1076at 1113.288 kb on + strand, within Dsui_1076at 1113.291 kb on - strand, within Dsui_1076at 1113.301 kb on - strand, within Dsui_1076at 1113.307 kb on - strand, within Dsui_1076at 1113.323 kb on + strand, within Dsui_1076at 1113.327 kb on + strand, within Dsui_1076at 1113.327 kb on + strand, within Dsui_1076at 1113.331 kb on - strand, within Dsui_1076at 1113.351 kb on + strand, within Dsui_1076at 1113.359 kb on - strand, within Dsui_1076at 1113.380 kb on + strand, within Dsui_1076at 1113.388 kb on - strandat 1113.399 kb on + strandat 1113.407 kb on - strandat 1113.407 kb on - strandat 1113.434 kb on + strandat 1113.453 kb on + strandat 1113.460 kb on + strandat 1113.461 kb on - strandat 1113.467 kb on - strandat 1113.467 kb on - strandat 1113.505 kb on + strandat 1113.546 kb on + strandat 1113.554 kb on - strandat 1113.575 kb on + strandat 1113.575 kb on - strandat 1113.575 kb on - strandat 1113.583 kb on - strandat 1113.659 kb on + strandat 1113.752 kb on + strand, within Dsui_1077at 1113.798 kb on + strand, within Dsui_1077at 1113.800 kb on - strand, within Dsui_1077at 1113.834 kb on + strand, within Dsui_1077at 1113.863 kb on + strand, within Dsui_1077at 1113.871 kb on - strand, within Dsui_1077at 1113.905 kb on + strand, within Dsui_1077at 1113.918 kb on - strand, within Dsui_1077at 1113.983 kb on + strandat 1113.983 kb on + strandat 1113.983 kb on + strandat 1113.983 kb on + strandat 1113.983 kb on + strandat 1113.983 kb on + strandat 1113.993 kb on + strandat 1114.048 kb on + strandat 1114.048 kb on + strandat 1114.062 kb on + strandat 1114.079 kb on + strandat 1114.132 kb on - strandat 1114.132 kb on - strandat 1114.132 kb on - strandat 1114.132 kb on - strandat 1114.135 kb on + strandat 1114.148 kb on - strandat 1114.164 kb on + strandat 1114.164 kb on + strandat 1114.187 kb on + strandat 1114.187 kb on + strandat 1114.195 kb on - strandat 1114.231 kb on + strandat 1114.263 kb on - strandat 1114.287 kb on + strandat 1114.287 kb on - strandat 1114.314 kb on + strandat 1114.314 kb on + strandat 1114.328 kb on - strandat 1114.375 kb on + strandat 1114.419 kb on - strandat 1114.424 kb on + strandat 1114.461 kb on + strandat 1114.461 kb on + strandat 1114.464 kb on - strandat 1114.469 kb on - strandat 1114.474 kb on - strandat 1114.484 kb on + strandat 1114.492 kb on - strandat 1114.502 kb on + strandat 1114.502 kb on + strandat 1114.505 kb on - strandat 1114.510 kb on - strandat 1114.512 kb on + strandat 1114.520 kb on - strandat 1114.520 kb on - strandat 1114.520 kb on - strandat 1114.520 kb on - strandat 1114.521 kb on - strandat 1114.522 kb on + strandat 1114.523 kb on + strandat 1114.523 kb on + strandat 1114.523 kb on + strandat 1114.523 kb on + strandat 1114.531 kb on - strandat 1114.541 kb on - strandat 1114.542 kb on + strandat 1114.552 kb on - strandat 1114.562 kb on - strandat 1114.567 kb on - strandat 1114.569 kb on + strandat 1114.569 kb on + strandat 1114.577 kb on - strandat 1114.590 kb on + strandat 1114.593 kb on - strandat 1114.600 kb on + strandat 1114.600 kb on + strandat 1114.600 kb on + strandat 1114.600 kb on + strandat 1114.608 kb on - strandat 1114.608 kb on - strandat 1114.610 kb on + strandat 1114.612 kb on + strandat 1114.613 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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1,110,413 + Dsui_1074 0.86 -0.1
1,110,413 + Dsui_1074 0.86 +0.2
1,110,421 - Dsui_1074 0.86 +0.9
1,110,421 - Dsui_1074 0.86 -1.7
1,110,421 - Dsui_1074 0.86 +0.1
1,110,422 + Dsui_1074 0.86 +0.2
1,110,429 - Dsui_1074 0.87 -0.5
1,110,430 - Dsui_1074 0.87 +0.4
1,110,483 - Dsui_1074 0.88 -0.2
1,110,524 + Dsui_1074 0.90 +0.6
1,110,537 - -1.2
1,110,549 - -2.8
1,110,557 - +0.7
1,110,559 - +0.0
1,110,563 + +2.4
1,110,591 - +0.1
1,110,717 - -1.0
1,110,769 + -0.3
1,110,963 - Dsui_1075 0.24 +0.1
1,110,970 - Dsui_1075 0.26 -2.2
1,110,973 + Dsui_1075 0.27 -0.6
1,111,024 - Dsui_1075 0.40 -0.4
1,111,062 + Dsui_1075 0.49 +0.3
1,111,070 - Dsui_1075 0.51 +0.0
1,111,070 - Dsui_1075 0.51 -0.1
1,111,106 + Dsui_1075 0.60 +0.0
1,111,148 - Dsui_1075 0.70 -0.9
1,111,239 + +0.7
1,111,263 - +0.5
1,111,287 + +0.1
1,111,296 + +0.3
1,111,296 + -0.4
1,111,296 + -0.3
1,111,304 - -0.2
1,111,322 - -1.3
1,111,333 - -1.0
1,111,379 + -0.0
1,111,507 + +1.5
1,111,507 + -0.2
1,111,507 + -0.6
1,111,515 - +0.3
1,111,515 - +0.4
1,111,542 + -0.2
1,111,599 + Dsui_1076 0.12 -1.4
1,111,666 - Dsui_1076 0.15 -1.4
1,111,682 - Dsui_1076 0.15 -1.8
1,111,729 + Dsui_1076 0.17 +0.1
1,111,749 + Dsui_1076 0.18 -0.9
1,111,807 - Dsui_1076 0.21 -1.8
1,111,817 - Dsui_1076 0.21 -0.8
1,111,891 + Dsui_1076 0.24 +1.1
1,111,894 - Dsui_1076 0.25 -2.7
1,111,935 - Dsui_1076 0.26 -0.3
1,111,945 - Dsui_1076 0.27 -1.3
1,111,958 + Dsui_1076 0.27 +0.5
1,112,025 - Dsui_1076 0.30 -0.3
1,112,032 - Dsui_1076 0.31 -0.5
1,112,042 - Dsui_1076 0.31 -1.3
1,112,042 - Dsui_1076 0.31 -0.1
1,112,095 + Dsui_1076 0.33 -1.3
1,112,127 + Dsui_1076 0.35 +0.1
1,112,129 + Dsui_1076 0.35 -0.7
1,112,143 - Dsui_1076 0.35 -1.5
1,112,171 + Dsui_1076 0.37 -1.5
1,112,179 - Dsui_1076 0.37 +0.0
1,112,255 - Dsui_1076 0.40 -1.3
1,112,282 + Dsui_1076 0.42 -0.3
1,112,289 - Dsui_1076 0.42 -0.9
1,112,313 + Dsui_1076 0.43 -0.6
1,112,334 + Dsui_1076 0.44 -0.2
1,112,334 + Dsui_1076 0.44 +0.3
1,112,386 - Dsui_1076 0.46 -0.4
1,112,388 + Dsui_1076 0.46 +0.2
1,112,398 + Dsui_1076 0.47 -0.9
1,112,493 - Dsui_1076 0.51 +0.5
1,112,502 + Dsui_1076 0.51 +0.4
1,112,502 + Dsui_1076 0.51 +0.5
1,112,537 + Dsui_1076 0.53 -0.0
1,112,545 - Dsui_1076 0.53 -0.0
1,112,550 - Dsui_1076 0.53 +0.5
1,112,578 + Dsui_1076 0.55 -0.4
1,112,583 + Dsui_1076 0.55 -0.5
1,112,645 - Dsui_1076 0.57 -0.3
1,112,694 + Dsui_1076 0.60 +0.1
1,112,721 + Dsui_1076 0.61 +0.4
1,112,770 - Dsui_1076 0.63 +0.4
1,112,770 - Dsui_1076 0.63 -0.4
1,112,812 + Dsui_1076 0.65 +0.0
1,112,825 + Dsui_1076 0.65 +0.3
1,112,905 + Dsui_1076 0.69 -0.4
1,112,923 - Dsui_1076 0.70 -0.4
1,112,928 - Dsui_1076 0.70 -1.5
1,112,939 + Dsui_1076 0.70 +1.7
1,112,947 - Dsui_1076 0.71 -0.6
1,112,947 - Dsui_1076 0.71 +0.8
1,112,952 + Dsui_1076 0.71 +0.5
1,112,960 - Dsui_1076 0.71 +0.3
1,112,985 + Dsui_1076 0.72 +1.2
1,113,076 - Dsui_1076 0.76 -0.8
1,113,278 + Dsui_1076 0.85 +1.3
1,113,288 + Dsui_1076 0.86 +1.2
1,113,288 + Dsui_1076 0.86 +0.6
1,113,288 + Dsui_1076 0.86 -0.1
1,113,288 + Dsui_1076 0.86 -0.6
1,113,291 - Dsui_1076 0.86 +0.2
1,113,301 - Dsui_1076 0.86 +0.1
1,113,307 - Dsui_1076 0.86 +0.4
1,113,323 + Dsui_1076 0.87 -0.0
1,113,327 + Dsui_1076 0.87 +2.4
1,113,327 + Dsui_1076 0.87 -0.1
1,113,331 - Dsui_1076 0.88 -1.0
1,113,351 + Dsui_1076 0.88 -0.2
1,113,359 - Dsui_1076 0.89 +0.5
1,113,380 + Dsui_1076 0.90 +0.1
1,113,388 - -0.6
1,113,399 + +0.7
1,113,407 - +0.6
1,113,407 - -2.1
1,113,434 + +0.1
1,113,453 + +0.1
1,113,460 + -0.6
1,113,461 - +0.5
1,113,467 - -1.6
1,113,467 - +0.2
1,113,505 + +0.4
1,113,546 + +0.1
1,113,554 - -0.1
1,113,575 + +0.2
1,113,575 - -1.0
1,113,575 - -2.3
1,113,583 - -0.8
1,113,659 + -0.6
1,113,752 + Dsui_1077 0.13 +0.1
1,113,798 + Dsui_1077 0.31 +0.6
1,113,800 - Dsui_1077 0.31 -1.6
1,113,834 + Dsui_1077 0.45 -0.9
1,113,863 + Dsui_1077 0.56 +0.3
1,113,871 - Dsui_1077 0.59 +0.3
1,113,905 + Dsui_1077 0.73 +1.4
1,113,918 - Dsui_1077 0.78 +0.6
1,113,983 + +0.1
1,113,983 + +0.1
1,113,983 + -0.4
1,113,983 + -0.4
1,113,983 + +0.3
1,113,983 + +0.5
1,113,993 + +0.5
1,114,048 + -1.0
1,114,048 + -0.3
1,114,062 + +0.9
1,114,079 + +0.6
1,114,132 - -0.2
1,114,132 - +1.8
1,114,132 - -0.1
1,114,132 - +0.4
1,114,135 + -0.5
1,114,148 - -0.3
1,114,164 + +0.5
1,114,164 + -1.8
1,114,187 + +0.6
1,114,187 + +2.6
1,114,195 - -0.2
1,114,231 + +0.4
1,114,263 - -1.2
1,114,287 + +0.0
1,114,287 - +0.6
1,114,314 + +0.7
1,114,314 + +0.3
1,114,328 - +0.9
1,114,375 + +0.0
1,114,419 - +0.1
1,114,424 + +0.1
1,114,461 + -0.4
1,114,461 + +0.3
1,114,464 - +0.5
1,114,469 - +0.3
1,114,474 - -0.2
1,114,484 + -0.1
1,114,492 - +0.5
1,114,502 + -1.3
1,114,502 + -0.9
1,114,505 - -1.9
1,114,510 - -1.2
1,114,512 + +1.0
1,114,520 - -1.5
1,114,520 - +1.5
1,114,520 - +0.4
1,114,520 - -4.1
1,114,521 - +0.8
1,114,522 + -0.3
1,114,523 + -0.4
1,114,523 + -0.1
1,114,523 + +0.3
1,114,523 + -0.5
1,114,531 - +0.4
1,114,541 - -1.4
1,114,542 + +0.7
1,114,552 - -0.8
1,114,562 - -0.7
1,114,567 - +0.3
1,114,569 + -0.3
1,114,569 + +0.4
1,114,577 - +0.9
1,114,590 + +0.0
1,114,593 - +0.5
1,114,600 + +0.7
1,114,600 + +1.0
1,114,600 + +1.8
1,114,600 + +0.9
1,114,608 - -1.5
1,114,608 - +0.0
1,114,610 + -0.1
1,114,612 + +0.2
1,114,613 - -0.8

Or see this region's nucleotide sequence