Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt Dsui_0935 and Dsui_0936 are separated by 129 nucleotides Dsui_0936 and Dsui_0937 are separated by 99 nucleotides Dsui_0937 and Dsui_0938 are separated by 156 nucleotides Dsui_0938 and Dsui_0939 are separated by 97 nucleotides
Dsui_0935: Dsui_0935 - cytochrome c5, at 963,970 to 964,413
_0935
Dsui_0936: Dsui_0936 - tRNA-Arg, at 964,543 to 964,619
_0936
Dsui_0937: Dsui_0937 - hypothetical protein, at 964,719 to 965,039
_0937
Dsui_0938: Dsui_0938 - HD-GYP domain-containing protein, at 965,196 to 966,275
_0938
Dsui_0939: Dsui_0939 - diguanylate cyclase (GGDEF) domain-containing protein, at 966,373 to 968,235
_0939
Position (kb) 965
966
967 Strain fitness (log2 ratio) -2
-1
0
1
2 at 964.316 kb on + strand at 964.404 kb on + strand at 964.415 kb on - strand at 964.437 kb on + strand at 964.449 kb on - strand at 964.638 kb on + strand at 964.646 kb on - strand at 964.647 kb on - strand at 964.668 kb on + strand at 964.768 kb on + strand, within Dsui_0937 at 964.779 kb on + strand, within Dsui_0937 at 964.788 kb on - strand, within Dsui_0937 at 964.838 kb on + strand at 964.908 kb on + strand, within Dsui_0937 at 964.983 kb on - strand, within Dsui_0937 at 964.994 kb on - strand, within Dsui_0937 at 964.994 kb on - strand, within Dsui_0937 at 965.026 kb on - strand at 965.049 kb on - strand at 965.056 kb on + strand at 965.074 kb on - strand at 965.147 kb on + strand at 965.155 kb on - strand at 965.178 kb on + strand at 965.187 kb on - strand at 965.194 kb on + strand at 965.320 kb on - strand at 965.400 kb on - strand, within Dsui_0938 at 965.404 kb on + strand, within Dsui_0938 at 965.459 kb on + strand, within Dsui_0938 at 965.482 kb on - strand, within Dsui_0938 at 965.486 kb on - strand, within Dsui_0938 at 965.682 kb on + strand, within Dsui_0938 at 965.957 kb on + strand, within Dsui_0938 at 966.020 kb on - strand, within Dsui_0938 at 966.066 kb on - strand, within Dsui_0938 at 966.294 kb on - strand at 966.294 kb on - strand at 966.336 kb on - strand at 966.354 kb on + strand at 966.403 kb on - strand at 966.419 kb on + strand at 966.487 kb on - strand at 966.552 kb on - strand at 966.581 kb on + strand, within Dsui_0939 at 966.711 kb on + strand, within Dsui_0939 at 966.719 kb on - strand, within Dsui_0939 at 966.855 kb on + strand, within Dsui_0939 at 966.855 kb on + strand, within Dsui_0939 at 966.868 kb on - strand at 966.931 kb on - strand at 966.999 kb on - strand at 967.237 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand, within Dsui_0939 at 967.242 kb on + strand at 967.250 kb on + strand at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.250 kb on - strand, within Dsui_0939 at 967.251 kb on - strand at 967.251 kb on - strand, within Dsui_0939
Per-strain Table
Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate remove 964,316 + +0.2 964,404 + -0.1 964,415 - +0.3 964,437 + +0.5 964,449 - +0.2 964,638 + +1.2 964,646 - +0.3 964,647 - -0.1 964,668 + +0.6 964,768 + Dsui_0937 0.15 +0.1 964,779 + Dsui_0937 0.19 +1.2 964,788 - Dsui_0937 0.21 +0.3 964,838 + -1.1 964,908 + Dsui_0937 0.59 +0.9 964,983 - Dsui_0937 0.82 +0.4 964,994 - Dsui_0937 0.86 +2.6 964,994 - Dsui_0937 0.86 -1.7 965,026 - +1.0 965,049 - +0.3 965,056 + +0.5 965,074 - +0.2 965,147 + -0.2 965,155 - +0.1 965,178 + +0.5 965,187 - -2.0 965,194 + +0.6 965,320 - +0.6 965,400 - Dsui_0938 0.19 -0.1 965,404 + Dsui_0938 0.19 +0.0 965,459 + Dsui_0938 0.24 +0.8 965,482 - Dsui_0938 0.26 +0.8 965,486 - Dsui_0938 0.27 +1.4 965,682 + Dsui_0938 0.45 +1.5 965,957 + Dsui_0938 0.70 +0.6 966,020 - Dsui_0938 0.76 +0.5 966,066 - Dsui_0938 0.81 -0.3 966,294 - -0.1 966,294 - +0.3 966,336 - +1.0 966,354 + +1.2 966,403 - -0.3 966,419 + +1.7 966,487 - +0.3 966,552 - +0.3 966,581 + Dsui_0939 0.11 +0.2 966,711 + Dsui_0939 0.18 -0.2 966,719 - Dsui_0939 0.19 +0.2 966,855 + Dsui_0939 0.26 +0.0 966,855 + Dsui_0939 0.26 +1.0 966,868 - +1.9 966,931 - -2.3 966,999 - -1.9 967,237 + Dsui_0939 0.46 -0.7 967,242 + Dsui_0939 0.47 +0.6 967,242 + Dsui_0939 0.47 +0.3 967,242 + Dsui_0939 0.47 +1.2 967,242 + +0.9 967,250 + +0.0 967,250 - Dsui_0939 0.47 -0.5 967,250 - Dsui_0939 0.47 +0.4 967,250 - Dsui_0939 0.47 -0.2 967,250 - Dsui_0939 0.47 -0.4 967,251 - -1.5 967,251 - Dsui_0939 0.47 +1.2
Or see this region's nucleotide sequence