Strain Fitness in Dechlorosoma suillum PS around Dsui_0127

Experiment: T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntDsui_0126 and Dsui_0127 are separated by 160 nucleotidesDsui_0127 and Dsui_0128 are separated by 81 nucleotides Dsui_0126: Dsui_0126 - (4Fe-4S) cluster-containing protein, at 123,453 to 124,892 _0126 Dsui_0127: Dsui_0127 - transcriptional regulator, at 125,053 to 125,886 _0127 Dsui_0128: Dsui_0128 - D-alanyl-D-alanine carboxypeptidase, at 125,968 to 126,987 _0128 Position (kb) 125 126Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 124.092 kb on + strand, within Dsui_0126at 124.111 kb on + strandat 124.127 kb on + strand, within Dsui_0126at 124.220 kb on - strand, within Dsui_0126at 124.276 kb on + strand, within Dsui_0126at 124.286 kb on - strandat 124.322 kb on - strand, within Dsui_0126at 124.332 kb on + strandat 124.348 kb on - strand, within Dsui_0126at 124.396 kb on - strand, within Dsui_0126at 124.396 kb on - strand, within Dsui_0126at 124.533 kb on - strand, within Dsui_0126at 124.543 kb on - strand, within Dsui_0126at 124.567 kb on - strand, within Dsui_0126at 124.740 kb on - strand, within Dsui_0126at 124.759 kb on - strandat 124.781 kb on + strandat 124.785 kb on - strandat 124.828 kb on - strandat 124.848 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.900 kb on + strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.908 kb on - strandat 124.910 kb on + strandat 125.014 kb on - strandat 125.072 kb on + strandat 125.080 kb on - strandat 125.135 kb on + strandat 125.204 kb on + strand, within Dsui_0127at 125.204 kb on + strand, within Dsui_0127at 125.204 kb on + strand, within Dsui_0127at 125.212 kb on - strand, within Dsui_0127at 125.217 kb on + strand, within Dsui_0127at 125.217 kb on + strand, within Dsui_0127at 125.240 kb on - strand, within Dsui_0127at 125.266 kb on + strand, within Dsui_0127at 125.309 kb on + strand, within Dsui_0127at 125.383 kb on - strand, within Dsui_0127at 125.388 kb on - strand, within Dsui_0127at 125.399 kb on - strand, within Dsui_0127at 125.411 kb on + strand, within Dsui_0127at 125.429 kb on + strand, within Dsui_0127at 125.482 kb on - strand, within Dsui_0127at 125.514 kb on + strand, within Dsui_0127at 125.536 kb on - strand, within Dsui_0127at 125.541 kb on - strand, within Dsui_0127at 125.556 kb on + strand, within Dsui_0127at 125.556 kb on + strand, within Dsui_0127at 125.564 kb on - strand, within Dsui_0127at 125.816 kb on + strandat 125.837 kb on + strandat 125.857 kb on + strandat 125.857 kb on + strandat 125.858 kb on - strandat 125.862 kb on + strandat 125.875 kb on - strandat 126.085 kb on - strand, within Dsui_0128at 126.143 kb on + strandat 126.151 kb on - strand, within Dsui_0128at 126.151 kb on - strand, within Dsui_0128at 126.151 kb on - strand, within Dsui_0128at 126.173 kb on + strand, within Dsui_0128at 126.221 kb on + strand, within Dsui_0128at 126.233 kb on + strand, within Dsui_0128at 126.271 kb on + strandat 126.279 kb on - strand, within Dsui_0128at 126.284 kb on + strand, within Dsui_0128at 126.298 kb on - strand, within Dsui_0128at 126.406 kb on + strand, within Dsui_0128at 126.438 kb on + strand, within Dsui_0128at 126.439 kb on + strand, within Dsui_0128at 126.466 kb on + strand, within Dsui_0128at 126.534 kb on + strand, within Dsui_0128at 126.534 kb on + strand, within Dsui_0128at 126.541 kb on - strand, within Dsui_0128at 126.603 kb on + strandat 126.603 kb on + strandat 126.656 kb on - strand, within Dsui_0128at 126.680 kb on + strand, within Dsui_0128at 126.688 kb on - strand, within Dsui_0128at 126.688 kb on - strand, within Dsui_0128at 126.704 kb on - strand, within Dsui_0128at 126.715 kb on - strand, within Dsui_0128at 126.720 kb on - strand, within Dsui_0128at 126.727 kb on + strand, within Dsui_0128at 126.774 kb on + strand, within Dsui_0128at 126.782 kb on - strand, within Dsui_0128at 126.782 kb on - strand, within Dsui_0128at 126.842 kb on + strand, within Dsui_0128at 126.850 kb on - strand, within Dsui_0128

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Per-strain Table

Position Strand Gene LocusTag Fraction T0 transferred and grown anaerobically in PS minimal medium+ 10 mM ClO4 and 20 mM lactate
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124,092 + Dsui_0126 0.44 +0.0
124,111 + +1.3
124,127 + Dsui_0126 0.47 -0.3
124,220 - Dsui_0126 0.53 +1.6
124,276 + Dsui_0126 0.57 -1.5
124,286 - +1.9
124,322 - Dsui_0126 0.60 +0.4
124,332 + +0.6
124,348 - Dsui_0126 0.62 +0.8
124,396 - Dsui_0126 0.65 +1.8
124,396 - Dsui_0126 0.65 +1.4
124,533 - Dsui_0126 0.75 -1.5
124,543 - Dsui_0126 0.76 +1.5
124,567 - Dsui_0126 0.77 -1.1
124,740 - Dsui_0126 0.89 +1.1
124,759 - +1.0
124,781 + -0.6
124,785 - +1.9
124,828 - +1.5
124,848 + -1.3
124,900 + -3.2
124,900 + -1.2
124,900 + -0.4
124,900 + -2.6
124,900 + +0.1
124,900 + -1.9
124,900 + -0.8
124,908 - -0.3
124,908 - +1.0
124,908 - +0.8
124,908 - +1.2
124,908 - -0.1
124,908 - +1.2
124,908 - +0.5
124,908 - +0.1
124,908 - +0.6
124,910 + -1.8
125,014 - -1.3
125,072 + -1.2
125,080 - -2.2
125,135 + -0.2
125,204 + Dsui_0127 0.18 +0.0
125,204 + Dsui_0127 0.18 -0.5
125,204 + Dsui_0127 0.18 +1.1
125,212 - Dsui_0127 0.19 -1.6
125,217 + Dsui_0127 0.20 -0.6
125,217 + Dsui_0127 0.20 +0.2
125,240 - Dsui_0127 0.22 -0.6
125,266 + Dsui_0127 0.26 -0.2
125,309 + Dsui_0127 0.31 -0.0
125,383 - Dsui_0127 0.40 -0.3
125,388 - Dsui_0127 0.40 -1.6
125,399 - Dsui_0127 0.41 -0.3
125,411 + Dsui_0127 0.43 -0.2
125,429 + Dsui_0127 0.45 -0.0
125,482 - Dsui_0127 0.51 -1.3
125,514 + Dsui_0127 0.55 -0.2
125,536 - Dsui_0127 0.58 -1.7
125,541 - Dsui_0127 0.59 -1.7
125,556 + Dsui_0127 0.60 -0.0
125,556 + Dsui_0127 0.60 -0.2
125,564 - Dsui_0127 0.61 -0.5
125,816 + -0.5
125,837 + -0.5
125,857 + +1.4
125,857 + +1.3
125,858 - -0.7
125,862 + +1.1
125,875 - +0.7
126,085 - Dsui_0128 0.11 -0.6
126,143 + +0.4
126,151 - Dsui_0128 0.18 -0.1
126,151 - Dsui_0128 0.18 +1.2
126,151 - Dsui_0128 0.18 +0.4
126,173 + Dsui_0128 0.20 -2.3
126,221 + Dsui_0128 0.25 -0.0
126,233 + Dsui_0128 0.26 -0.4
126,271 + -0.3
126,279 - Dsui_0128 0.30 -1.9
126,284 + Dsui_0128 0.31 -0.7
126,298 - Dsui_0128 0.32 +1.2
126,406 + Dsui_0128 0.43 +0.2
126,438 + Dsui_0128 0.46 -1.2
126,439 + Dsui_0128 0.46 -2.2
126,466 + Dsui_0128 0.49 -2.5
126,534 + Dsui_0128 0.55 +0.7
126,534 + Dsui_0128 0.55 +2.3
126,541 - Dsui_0128 0.56 -0.3
126,603 + -1.0
126,603 + -0.3
126,656 - Dsui_0128 0.67 -0.8
126,680 + Dsui_0128 0.70 +1.9
126,688 - Dsui_0128 0.71 +0.3
126,688 - Dsui_0128 0.71 -0.3
126,704 - Dsui_0128 0.72 -0.2
126,715 - Dsui_0128 0.73 +0.3
126,720 - Dsui_0128 0.74 -0.1
126,727 + Dsui_0128 0.74 -0.5
126,774 + Dsui_0128 0.79 -2.6
126,782 - Dsui_0128 0.80 +0.4
126,782 - Dsui_0128 0.80 +0.3
126,842 + Dsui_0128 0.86 -0.2
126,850 - Dsui_0128 0.86 -0.1

Or see this region's nucleotide sequence