Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19095

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_19090 and CSW01_19095 are separated by 130 nucleotidesCSW01_19095 and CSW01_19100 are separated by 89 nucleotides CSW01_19090: CSW01_19090 - ABC transporter ATP-binding protein, at 947,845 to 949,704 _19090 CSW01_19095: CSW01_19095 - DUF445 domain-containing protein, at 949,835 to 950,560 _19095 CSW01_19100: CSW01_19100 - alkene reductase, at 950,650 to 951,693 _19100 Position (kb) 949 950 951Strain fitness (log2 ratio) -3 -2 -1 0 1 2at 948.861 kb on + strand, within CSW01_19090at 948.861 kb on + strand, within CSW01_19090at 948.909 kb on - strand, within CSW01_19090at 948.922 kb on + strand, within CSW01_19090at 948.936 kb on - strand, within CSW01_19090at 949.178 kb on - strand, within CSW01_19090at 949.237 kb on - strand, within CSW01_19090at 949.237 kb on - strand, within CSW01_19090at 949.245 kb on + strand, within CSW01_19090at 949.263 kb on + strand, within CSW01_19090at 949.264 kb on + strand, within CSW01_19090at 949.281 kb on - strand, within CSW01_19090at 949.287 kb on + strand, within CSW01_19090at 949.313 kb on - strand, within CSW01_19090at 949.395 kb on + strand, within CSW01_19090at 949.403 kb on - strand, within CSW01_19090at 949.403 kb on - strand, within CSW01_19090at 949.511 kb on + strand, within CSW01_19090at 949.525 kb on + strandat 949.628 kb on - strandat 949.640 kb on - strandat 949.640 kb on - strandat 949.642 kb on + strandat 949.722 kb on - strandat 949.722 kb on - strandat 949.727 kb on - strandat 949.727 kb on - strandat 949.727 kb on - strandat 949.868 kb on - strandat 949.897 kb on + strandat 949.986 kb on + strand, within CSW01_19095at 950.004 kb on - strand, within CSW01_19095at 950.023 kb on - strand, within CSW01_19095at 950.201 kb on - strand, within CSW01_19095at 950.287 kb on + strand, within CSW01_19095at 950.302 kb on + strand, within CSW01_19095at 950.327 kb on + strand, within CSW01_19095at 950.371 kb on - strand, within CSW01_19095at 950.415 kb on + strand, within CSW01_19095at 950.768 kb on - strand, within CSW01_19100at 950.816 kb on + strand, within CSW01_19100at 950.816 kb on + strand, within CSW01_19100at 950.837 kb on - strand, within CSW01_19100at 950.839 kb on + strand, within CSW01_19100at 951.021 kb on + strand, within CSW01_19100at 951.242 kb on + strand, within CSW01_19100at 951.274 kb on - strand, within CSW01_19100at 951.278 kb on + strand, within CSW01_19100at 951.278 kb on + strand, within CSW01_19100at 951.281 kb on - strand, within CSW01_19100at 951.310 kb on + strand, within CSW01_19100at 951.318 kb on - strand, within CSW01_19100at 951.318 kb on - strand, within CSW01_19100at 951.327 kb on - strand, within CSW01_19100at 951.351 kb on - strand, within CSW01_19100at 951.387 kb on + strand, within CSW01_19100at 951.438 kb on + strand, within CSW01_19100at 951.472 kb on - strand, within CSW01_19100at 951.474 kb on + strand, within CSW01_19100at 951.474 kb on + strand, within CSW01_19100at 951.482 kb on - strand, within CSW01_19100at 951.493 kb on + strand, within CSW01_19100at 951.493 kb on + strand, within CSW01_19100at 951.501 kb on - strand, within CSW01_19100at 951.510 kb on + strand, within CSW01_19100

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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948,861 + CSW01_19090 0.55 -0.3
948,861 + CSW01_19090 0.55 -2.8
948,909 - CSW01_19090 0.57 +0.0
948,922 + CSW01_19090 0.58 +1.1
948,936 - CSW01_19090 0.59 +0.9
949,178 - CSW01_19090 0.72 -0.3
949,237 - CSW01_19090 0.75 -2.2
949,237 - CSW01_19090 0.75 +0.2
949,245 + CSW01_19090 0.75 +1.1
949,263 + CSW01_19090 0.76 +0.0
949,264 + CSW01_19090 0.76 -1.4
949,281 - CSW01_19090 0.77 -0.4
949,287 + CSW01_19090 0.78 -1.1
949,313 - CSW01_19090 0.79 +0.0
949,395 + CSW01_19090 0.83 +0.4
949,403 - CSW01_19090 0.84 -0.8
949,403 - CSW01_19090 0.84 +0.2
949,511 + CSW01_19090 0.90 +1.0
949,525 + +1.0
949,628 - -3.4
949,640 - +0.6
949,640 - -2.5
949,642 + +0.4
949,722 - +1.3
949,722 - -1.0
949,727 - -2.5
949,727 - -1.6
949,727 - -1.0
949,868 - -0.4
949,897 + +0.4
949,986 + CSW01_19095 0.21 +1.4
950,004 - CSW01_19095 0.23 +1.7
950,023 - CSW01_19095 0.26 +1.4
950,201 - CSW01_19095 0.50 +2.0
950,287 + CSW01_19095 0.62 -0.4
950,302 + CSW01_19095 0.64 +0.4
950,327 + CSW01_19095 0.68 +1.2
950,371 - CSW01_19095 0.74 +0.6
950,415 + CSW01_19095 0.80 +2.4
950,768 - CSW01_19100 0.11 +1.2
950,816 + CSW01_19100 0.16 -1.0
950,816 + CSW01_19100 0.16 -0.1
950,837 - CSW01_19100 0.18 -1.2
950,839 + CSW01_19100 0.18 -1.0
951,021 + CSW01_19100 0.36 -0.3
951,242 + CSW01_19100 0.57 -0.0
951,274 - CSW01_19100 0.60 +0.1
951,278 + CSW01_19100 0.60 +0.6
951,278 + CSW01_19100 0.60 -2.0
951,281 - CSW01_19100 0.60 -0.6
951,310 + CSW01_19100 0.63 -1.2
951,318 - CSW01_19100 0.64 +0.7
951,318 - CSW01_19100 0.64 +1.0
951,327 - CSW01_19100 0.65 -0.5
951,351 - CSW01_19100 0.67 -3.4
951,387 + CSW01_19100 0.71 -2.1
951,438 + CSW01_19100 0.75 -1.7
951,472 - CSW01_19100 0.79 +0.6
951,474 + CSW01_19100 0.79 +1.1
951,474 + CSW01_19100 0.79 -2.4
951,482 - CSW01_19100 0.80 +2.4
951,493 + CSW01_19100 0.81 +0.9
951,493 + CSW01_19100 0.81 -1.1
951,501 - CSW01_19100 0.82 +0.3
951,510 + CSW01_19100 0.82 -0.1

Or see this region's nucleotide sequence