Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_19045

Experiment: ICP1_phage_2.3_MOI_rep1

Add experiment(s):

Zoom: Pan:

Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

download SVG
500 ntCSW01_19040 and CSW01_19045 are separated by 83 nucleotidesCSW01_19045 and CSW01_19050 are separated by 134 nucleotides CSW01_19040: CSW01_19040 - FAD-binding oxidoreductase, at 932,341 to 935,220 _19040 CSW01_19045: CSW01_19045 - phosphoenolpyruvate synthase regulatory protein, at 935,304 to 936,137 _19045 CSW01_19050: CSW01_19050 - phosphoenolpyruvate synthase, at 936,272 to 938,683 _19050 Position (kb) 935 936 937Strain fitness (log2 ratio) -5 -4 -3 -2 -1 0 1 2at 934.324 kb on + strand, within CSW01_19040at 934.430 kb on - strand, within CSW01_19040at 934.494 kb on + strand, within CSW01_19040at 934.504 kb on - strand, within CSW01_19040at 934.560 kb on - strand, within CSW01_19040at 934.562 kb on + strand, within CSW01_19040at 934.570 kb on - strand, within CSW01_19040at 934.617 kb on - strand, within CSW01_19040at 934.623 kb on + strand, within CSW01_19040at 934.636 kb on + strand, within CSW01_19040at 934.636 kb on + strand, within CSW01_19040at 934.636 kb on - strand, within CSW01_19040at 934.644 kb on - strand, within CSW01_19040at 934.661 kb on + strand, within CSW01_19040at 934.671 kb on + strand, within CSW01_19040at 934.671 kb on + strand, within CSW01_19040at 934.674 kb on - strand, within CSW01_19040at 934.679 kb on - strand, within CSW01_19040at 934.679 kb on - strand, within CSW01_19040at 934.717 kb on + strand, within CSW01_19040at 934.732 kb on + strand, within CSW01_19040at 934.766 kb on + strand, within CSW01_19040at 934.766 kb on + strand, within CSW01_19040at 934.819 kb on + strand, within CSW01_19040at 934.839 kb on + strand, within CSW01_19040at 934.839 kb on + strand, within CSW01_19040at 934.839 kb on + strand, within CSW01_19040at 934.839 kb on + strand, within CSW01_19040at 934.839 kb on + strand, within CSW01_19040at 934.847 kb on - strand, within CSW01_19040at 934.847 kb on - strand, within CSW01_19040at 934.898 kb on + strand, within CSW01_19040at 934.929 kb on + strand, within CSW01_19040at 934.929 kb on + strand, within CSW01_19040at 934.937 kb on - strandat 934.937 kb on - strandat 934.937 kb on - strandat 934.937 kb on - strandat 934.943 kb on + strandat 934.953 kb on - strandat 935.064 kb on + strandat 935.121 kb on - strandat 935.123 kb on - strandat 935.183 kb on + strandat 935.187 kb on + strandat 935.192 kb on + strandat 935.197 kb on + strandat 935.200 kb on - strandat 935.200 kb on - strandat 935.319 kb on + strandat 935.377 kb on + strandat 935.472 kb on - strand, within CSW01_19045at 935.528 kb on + strand, within CSW01_19045at 935.697 kb on + strand, within CSW01_19045at 935.730 kb on + strand, within CSW01_19045at 935.733 kb on + strand, within CSW01_19045at 935.738 kb on - strand, within CSW01_19045at 935.843 kb on + strand, within CSW01_19045at 935.845 kb on + strand, within CSW01_19045at 935.851 kb on - strand, within CSW01_19045at 935.851 kb on - strand, within CSW01_19045at 935.851 kb on - strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.853 kb on + strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.861 kb on - strand, within CSW01_19045at 935.901 kb on - strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.936 kb on + strand, within CSW01_19045at 935.944 kb on - strand, within CSW01_19045at 935.970 kb on - strand, within CSW01_19045at 935.979 kb on - strand, within CSW01_19045at 936.053 kb on + strand, within CSW01_19045at 936.110 kb on + strandat 936.486 kb on + strandat 936.527 kb on - strand, within CSW01_19050at 936.547 kb on + strand, within CSW01_19050at 936.547 kb on + strand, within CSW01_19050at 936.555 kb on - strand, within CSW01_19050at 936.592 kb on + strand, within CSW01_19050at 936.595 kb on - strand, within CSW01_19050at 936.686 kb on + strand, within CSW01_19050at 936.702 kb on - strand, within CSW01_19050at 936.702 kb on - strand, within CSW01_19050at 936.702 kb on - strand, within CSW01_19050at 936.796 kb on - strand, within CSW01_19050at 936.833 kb on + strand, within CSW01_19050at 936.842 kb on - strand, within CSW01_19050at 936.844 kb on + strand, within CSW01_19050at 936.913 kb on - strand, within CSW01_19050at 936.977 kb on + strand, within CSW01_19050at 936.996 kb on - strand, within CSW01_19050at 937.008 kb on - strand, within CSW01_19050at 937.008 kb on - strand, within CSW01_19050at 937.036 kb on + strand, within CSW01_19050at 937.058 kb on - strand, within CSW01_19050at 937.077 kb on + strand, within CSW01_19050at 937.077 kb on + strand, within CSW01_19050at 937.085 kb on - strand, within CSW01_19050

download strain data

Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
remove
934,324 + CSW01_19040 0.69 +0.5
934,430 - CSW01_19040 0.73 +0.5
934,494 + CSW01_19040 0.75 +1.0
934,504 - CSW01_19040 0.75 +1.5
934,560 - CSW01_19040 0.77 +1.0
934,562 + CSW01_19040 0.77 -0.3
934,570 - CSW01_19040 0.77 -0.7
934,617 - CSW01_19040 0.79 +0.2
934,623 + CSW01_19040 0.79 +1.4
934,636 + CSW01_19040 0.80 +0.4
934,636 + CSW01_19040 0.80 +0.6
934,636 - CSW01_19040 0.80 +0.5
934,644 - CSW01_19040 0.80 -3.4
934,661 + CSW01_19040 0.81 -2.8
934,671 + CSW01_19040 0.81 -2.7
934,671 + CSW01_19040 0.81 -3.4
934,674 - CSW01_19040 0.81 -0.3
934,679 - CSW01_19040 0.81 +1.4
934,679 - CSW01_19040 0.81 +0.7
934,717 + CSW01_19040 0.82 +0.6
934,732 + CSW01_19040 0.83 -0.8
934,766 + CSW01_19040 0.84 -0.2
934,766 + CSW01_19040 0.84 -0.7
934,819 + CSW01_19040 0.86 +0.2
934,839 + CSW01_19040 0.87 +0.6
934,839 + CSW01_19040 0.87 -1.0
934,839 + CSW01_19040 0.87 +0.9
934,839 + CSW01_19040 0.87 +0.8
934,839 + CSW01_19040 0.87 -0.5
934,847 - CSW01_19040 0.87 +1.0
934,847 - CSW01_19040 0.87 +0.1
934,898 + CSW01_19040 0.89 +0.2
934,929 + CSW01_19040 0.90 -3.7
934,929 + CSW01_19040 0.90 -2.4
934,937 - -0.1
934,937 - -0.0
934,937 - +0.7
934,937 - -3.0
934,943 + +0.8
934,953 - +0.4
935,064 + -1.2
935,121 - +1.7
935,123 - +0.6
935,183 + -0.3
935,187 + +0.8
935,192 + +2.1
935,197 + +0.5
935,200 - -0.1
935,200 - -0.6
935,319 + +1.4
935,377 + -0.9
935,472 - CSW01_19045 0.20 -0.4
935,528 + CSW01_19045 0.27 +0.8
935,697 + CSW01_19045 0.47 -0.4
935,730 + CSW01_19045 0.51 -0.5
935,733 + CSW01_19045 0.51 -0.0
935,738 - CSW01_19045 0.52 +0.3
935,843 + CSW01_19045 0.65 -0.6
935,845 + CSW01_19045 0.65 +0.9
935,851 - CSW01_19045 0.66 +0.7
935,851 - CSW01_19045 0.66 -0.5
935,851 - CSW01_19045 0.66 +0.0
935,853 + CSW01_19045 0.66 +0.9
935,853 + CSW01_19045 0.66 +0.3
935,853 + CSW01_19045 0.66 +1.0
935,853 + CSW01_19045 0.66 -0.4
935,853 + CSW01_19045 0.66 -5.0
935,853 + CSW01_19045 0.66 +2.2
935,861 - CSW01_19045 0.67 +0.5
935,861 - CSW01_19045 0.67 -2.3
935,861 - CSW01_19045 0.67 +0.1
935,861 - CSW01_19045 0.67 +1.7
935,861 - CSW01_19045 0.67 -0.3
935,861 - CSW01_19045 0.67 +0.5
935,861 - CSW01_19045 0.67 -1.4
935,861 - CSW01_19045 0.67 -0.4
935,861 - CSW01_19045 0.67 -0.7
935,861 - CSW01_19045 0.67 +0.3
935,861 - CSW01_19045 0.67 -1.6
935,901 - CSW01_19045 0.72 -2.3
935,936 + CSW01_19045 0.76 -2.4
935,936 + CSW01_19045 0.76 -0.8
935,936 + CSW01_19045 0.76 -0.6
935,936 + CSW01_19045 0.76 +1.2
935,936 + CSW01_19045 0.76 -1.0
935,944 - CSW01_19045 0.77 -0.6
935,970 - CSW01_19045 0.80 -0.4
935,979 - CSW01_19045 0.81 -1.0
936,053 + CSW01_19045 0.90 +1.3
936,110 + -0.1
936,486 + +1.8
936,527 - CSW01_19050 0.11 -0.4
936,547 + CSW01_19050 0.11 -0.8
936,547 + CSW01_19050 0.11 +0.4
936,555 - CSW01_19050 0.12 -0.6
936,592 + CSW01_19050 0.13 -0.0
936,595 - CSW01_19050 0.13 +0.3
936,686 + CSW01_19050 0.17 +0.7
936,702 - CSW01_19050 0.18 -0.5
936,702 - CSW01_19050 0.18 -2.8
936,702 - CSW01_19050 0.18 +0.6
936,796 - CSW01_19050 0.22 +0.9
936,833 + CSW01_19050 0.23 -0.5
936,842 - CSW01_19050 0.24 -2.5
936,844 + CSW01_19050 0.24 -0.4
936,913 - CSW01_19050 0.27 -2.1
936,977 + CSW01_19050 0.29 -1.2
936,996 - CSW01_19050 0.30 -1.4
937,008 - CSW01_19050 0.31 +0.5
937,008 - CSW01_19050 0.31 -1.4
937,036 + CSW01_19050 0.32 -2.2
937,058 - CSW01_19050 0.33 +1.1
937,077 + CSW01_19050 0.33 +0.8
937,077 + CSW01_19050 0.33 +1.0
937,085 - CSW01_19050 0.34 +1.1

Or see this region's nucleotide sequence