Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18940

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18935 and CSW01_18940 are separated by 24 nucleotidesCSW01_18940 and CSW01_18945 are separated by 100 nucleotides CSW01_18935: CSW01_18935 - DUF3541 domain-containing protein, at 909,279 to 910,487 _18935 CSW01_18940: CSW01_18940 - EamA family transporter, at 910,512 to 911,435 _18940 CSW01_18945: CSW01_18945 - LysR family transcriptional regulator, at 911,536 to 912,441 _18945 Position (kb) 910 911 912Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 909.522 kb on - strand, within CSW01_18935at 909.552 kb on - strand, within CSW01_18935at 909.552 kb on - strand, within CSW01_18935at 909.552 kb on - strand, within CSW01_18935at 909.632 kb on + strand, within CSW01_18935at 909.648 kb on + strand, within CSW01_18935at 909.653 kb on + strand, within CSW01_18935at 909.658 kb on + strand, within CSW01_18935at 909.661 kb on - strand, within CSW01_18935at 909.712 kb on + strand, within CSW01_18935at 909.712 kb on + strand, within CSW01_18935at 909.793 kb on + strand, within CSW01_18935at 909.801 kb on - strand, within CSW01_18935at 909.801 kb on - strand, within CSW01_18935at 909.871 kb on + strand, within CSW01_18935at 909.879 kb on - strand, within CSW01_18935at 909.887 kb on - strand, within CSW01_18935at 909.910 kb on - strand, within CSW01_18935at 909.992 kb on - strand, within CSW01_18935at 910.006 kb on + strand, within CSW01_18935at 910.006 kb on + strand, within CSW01_18935at 910.006 kb on + strand, within CSW01_18935at 910.014 kb on - strand, within CSW01_18935at 910.165 kb on + strand, within CSW01_18935at 910.228 kb on + strand, within CSW01_18935at 910.305 kb on - strand, within CSW01_18935at 910.346 kb on + strand, within CSW01_18935at 910.444 kb on - strandat 910.493 kb on + strandat 910.543 kb on + strandat 910.551 kb on - strandat 910.583 kb on - strandat 910.651 kb on + strand, within CSW01_18940at 910.659 kb on - strand, within CSW01_18940at 910.659 kb on - strand, within CSW01_18940at 910.659 kb on - strand, within CSW01_18940at 910.756 kb on + strand, within CSW01_18940at 910.759 kb on - strand, within CSW01_18940at 910.808 kb on + strand, within CSW01_18940at 910.816 kb on - strand, within CSW01_18940at 910.816 kb on - strand, within CSW01_18940at 910.920 kb on + strand, within CSW01_18940at 910.925 kb on + strand, within CSW01_18940at 910.928 kb on - strand, within CSW01_18940at 910.962 kb on + strand, within CSW01_18940at 910.970 kb on - strand, within CSW01_18940at 910.974 kb on + strand, within CSW01_18940at 910.974 kb on + strand, within CSW01_18940at 910.975 kb on - strand, within CSW01_18940at 911.061 kb on + strand, within CSW01_18940at 911.116 kb on + strand, within CSW01_18940at 911.116 kb on + strand, within CSW01_18940at 911.132 kb on - strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.134 kb on + strand, within CSW01_18940at 911.137 kb on - strand, within CSW01_18940at 911.142 kb on - strand, within CSW01_18940at 911.142 kb on - strand, within CSW01_18940at 911.147 kb on - strand, within CSW01_18940at 911.169 kb on + strand, within CSW01_18940at 911.188 kb on + strand, within CSW01_18940at 911.440 kb on - strandat 911.445 kb on - strandat 911.591 kb on - strandat 911.605 kb on - strandat 911.605 kb on - strandat 911.716 kb on - strand, within CSW01_18945at 911.721 kb on - strand, within CSW01_18945at 911.721 kb on - strand, within CSW01_18945at 911.806 kb on - strand, within CSW01_18945at 911.853 kb on - strand, within CSW01_18945at 911.905 kb on - strand, within CSW01_18945at 911.997 kb on + strand, within CSW01_18945at 912.005 kb on - strand, within CSW01_18945at 912.010 kb on + strand, within CSW01_18945at 912.076 kb on - strand, within CSW01_18945at 912.173 kb on + strand, within CSW01_18945at 912.181 kb on - strand, within CSW01_18945at 912.254 kb on + strand, within CSW01_18945at 912.277 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.312 kb on + strand, within CSW01_18945at 912.320 kb on - strand, within CSW01_18945at 912.320 kb on - strand, within CSW01_18945at 912.320 kb on - strand, within CSW01_18945at 912.320 kb on - strand, within CSW01_18945at 912.320 kb on - strand, within CSW01_18945at 912.353 kb on + strandat 912.387 kb on - strandat 912.392 kb on + strandat 912.396 kb on - strand

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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909,522 - CSW01_18935 0.20 +0.2
909,552 - CSW01_18935 0.23 -0.6
909,552 - CSW01_18935 0.23 -1.8
909,552 - CSW01_18935 0.23 +0.3
909,632 + CSW01_18935 0.29 +0.1
909,648 + CSW01_18935 0.31 -3.3
909,653 + CSW01_18935 0.31 -0.6
909,658 + CSW01_18935 0.31 -0.2
909,661 - CSW01_18935 0.32 +1.3
909,712 + CSW01_18935 0.36 +0.6
909,712 + CSW01_18935 0.36 -0.1
909,793 + CSW01_18935 0.43 -1.7
909,801 - CSW01_18935 0.43 -0.3
909,801 - CSW01_18935 0.43 -1.5
909,871 + CSW01_18935 0.49 -0.4
909,879 - CSW01_18935 0.50 -1.4
909,887 - CSW01_18935 0.50 -2.7
909,910 - CSW01_18935 0.52 -0.1
909,992 - CSW01_18935 0.59 -0.0
910,006 + CSW01_18935 0.60 +2.3
910,006 + CSW01_18935 0.60 -0.5
910,006 + CSW01_18935 0.60 -1.0
910,014 - CSW01_18935 0.61 -2.9
910,165 + CSW01_18935 0.73 +1.1
910,228 + CSW01_18935 0.78 -1.5
910,305 - CSW01_18935 0.85 -0.1
910,346 + CSW01_18935 0.88 -0.0
910,444 - +0.4
910,493 + -0.9
910,543 + -2.6
910,551 - -0.1
910,583 - +1.4
910,651 + CSW01_18940 0.15 -1.0
910,659 - CSW01_18940 0.16 +1.0
910,659 - CSW01_18940 0.16 +1.0
910,659 - CSW01_18940 0.16 +0.6
910,756 + CSW01_18940 0.26 -1.8
910,759 - CSW01_18940 0.27 -2.3
910,808 + CSW01_18940 0.32 +1.3
910,816 - CSW01_18940 0.33 +0.1
910,816 - CSW01_18940 0.33 +0.4
910,920 + CSW01_18940 0.44 -1.7
910,925 + CSW01_18940 0.45 -3.1
910,928 - CSW01_18940 0.45 +1.0
910,962 + CSW01_18940 0.49 +0.3
910,970 - CSW01_18940 0.50 -2.1
910,974 + CSW01_18940 0.50 +1.2
910,974 + CSW01_18940 0.50 -1.4
910,975 - CSW01_18940 0.50 +0.7
911,061 + CSW01_18940 0.59 +0.5
911,116 + CSW01_18940 0.65 -0.4
911,116 + CSW01_18940 0.65 +1.6
911,132 - CSW01_18940 0.67 +1.0
911,134 + CSW01_18940 0.67 +0.5
911,134 + CSW01_18940 0.67 -0.8
911,134 + CSW01_18940 0.67 +0.0
911,134 + CSW01_18940 0.67 -3.8
911,134 + CSW01_18940 0.67 +0.1
911,137 - CSW01_18940 0.68 -2.8
911,142 - CSW01_18940 0.68 +0.4
911,142 - CSW01_18940 0.68 -2.5
911,147 - CSW01_18940 0.69 -0.4
911,169 + CSW01_18940 0.71 -0.9
911,188 + CSW01_18940 0.73 -2.8
911,440 - +0.3
911,445 - -0.0
911,591 - +0.5
911,605 - +0.6
911,605 - -0.4
911,716 - CSW01_18945 0.20 -1.0
911,721 - CSW01_18945 0.20 +0.6
911,721 - CSW01_18945 0.20 +0.8
911,806 - CSW01_18945 0.30 +1.6
911,853 - CSW01_18945 0.35 -0.8
911,905 - CSW01_18945 0.41 +0.3
911,997 + CSW01_18945 0.51 -0.4
912,005 - CSW01_18945 0.52 +0.1
912,010 + CSW01_18945 0.52 +0.7
912,076 - CSW01_18945 0.60 -0.7
912,173 + CSW01_18945 0.70 +1.4
912,181 - CSW01_18945 0.71 +1.8
912,254 + CSW01_18945 0.79 +0.5
912,277 + CSW01_18945 0.82 -0.8
912,312 + CSW01_18945 0.86 +1.0
912,312 + CSW01_18945 0.86 +1.7
912,312 + CSW01_18945 0.86 +0.2
912,312 + CSW01_18945 0.86 +0.2
912,312 + CSW01_18945 0.86 +1.2
912,312 + CSW01_18945 0.86 +0.9
912,320 - CSW01_18945 0.87 +0.4
912,320 - CSW01_18945 0.87 -0.8
912,320 - CSW01_18945 0.87 +0.3
912,320 - CSW01_18945 0.87 +3.1
912,320 - CSW01_18945 0.87 -0.1
912,353 + +1.2
912,387 - +0.0
912,392 + +1.7
912,396 - -1.5

Or see this region's nucleotide sequence