Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18925 and CSW01_18930 are separated by 341 nucleotides CSW01_18930 and CSW01_18935 are separated by 286 nucleotides
CSW01_18925: CSW01_18925 - sensor domain-containing diguanylate cyclase, at 906,669 to 908,042
_18925
CSW01_18930: CSW01_18930 - alpha-ketoglutarate-dependent dioxygenase AlkB, at 908,384 to 908,992
_18930
CSW01_18935: CSW01_18935 - DUF3541 domain-containing protein, at 909,279 to 910,487
_18935
Position (kb) 908
909 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 907.442 kb on + strand, within CSW01_18925 at 907.442 kb on + strand, within CSW01_18925 at 907.497 kb on + strand, within CSW01_18925 at 907.505 kb on - strand, within CSW01_18925 at 907.524 kb on - strand, within CSW01_18925 at 907.575 kb on - strand, within CSW01_18925 at 907.646 kb on + strand, within CSW01_18925 at 907.754 kb on + strand, within CSW01_18925 at 907.806 kb on - strand, within CSW01_18925 at 907.846 kb on + strand, within CSW01_18925 at 907.918 kb on + strand at 907.986 kb on + strand at 908.015 kb on + strand at 908.045 kb on - strand at 908.093 kb on - strand at 908.205 kb on + strand at 908.237 kb on + strand at 908.245 kb on - strand at 908.252 kb on - strand at 908.269 kb on + strand at 908.295 kb on - strand at 908.610 kb on + strand, within CSW01_18930 at 908.618 kb on - strand, within CSW01_18930 at 908.620 kb on + strand, within CSW01_18930 at 908.620 kb on + strand, within CSW01_18930 at 908.630 kb on + strand, within CSW01_18930 at 908.703 kb on - strand, within CSW01_18930 at 908.729 kb on + strand, within CSW01_18930 at 908.737 kb on - strand, within CSW01_18930 at 908.737 kb on - strand, within CSW01_18930 at 908.758 kb on - strand, within CSW01_18930 at 908.802 kb on + strand, within CSW01_18930 at 908.810 kb on - strand, within CSW01_18930 at 908.810 kb on - strand, within CSW01_18930 at 908.906 kb on + strand, within CSW01_18930 at 908.924 kb on - strand, within CSW01_18930 at 909.076 kb on + strand at 909.082 kb on + strand at 909.090 kb on - strand at 909.193 kb on + strand at 909.198 kb on + strand at 909.201 kb on - strand at 909.201 kb on - strand at 909.201 kb on - strand at 909.214 kb on - strand at 909.216 kb on + strand at 909.307 kb on + strand at 909.412 kb on - strand, within CSW01_18935 at 909.423 kb on + strand, within CSW01_18935 at 909.431 kb on - strand, within CSW01_18935 at 909.448 kb on + strand, within CSW01_18935 at 909.522 kb on - strand, within CSW01_18935 at 909.552 kb on - strand, within CSW01_18935 at 909.552 kb on - strand, within CSW01_18935 at 909.552 kb on - strand, within CSW01_18935 at 909.632 kb on + strand, within CSW01_18935 at 909.648 kb on + strand, within CSW01_18935 at 909.653 kb on + strand, within CSW01_18935 at 909.658 kb on + strand, within CSW01_18935 at 909.661 kb on - strand, within CSW01_18935 at 909.712 kb on + strand, within CSW01_18935 at 909.712 kb on + strand, within CSW01_18935 at 909.793 kb on + strand, within CSW01_18935 at 909.801 kb on - strand, within CSW01_18935 at 909.801 kb on - strand, within CSW01_18935 at 909.871 kb on + strand, within CSW01_18935 at 909.879 kb on - strand, within CSW01_18935 at 909.887 kb on - strand, within CSW01_18935 at 909.910 kb on - strand, within CSW01_18935 at 909.992 kb on - strand, within CSW01_18935
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 907,442 + CSW01_18925 0.56 -0.4 907,442 + CSW01_18925 0.56 -0.9 907,497 + CSW01_18925 0.60 -1.1 907,505 - CSW01_18925 0.61 -0.6 907,524 - CSW01_18925 0.62 +2.5 907,575 - CSW01_18925 0.66 -2.4 907,646 + CSW01_18925 0.71 +0.2 907,754 + CSW01_18925 0.79 -0.9 907,806 - CSW01_18925 0.83 +2.6 907,846 + CSW01_18925 0.86 -3.5 907,918 + +1.2 907,986 + +0.1 908,015 + +0.2 908,045 - +1.1 908,093 - -0.1 908,205 + +0.3 908,237 + +0.1 908,245 - +0.6 908,252 - +0.4 908,269 + +0.0 908,295 - +0.5 908,610 + CSW01_18930 0.37 -0.5 908,618 - CSW01_18930 0.38 +1.2 908,620 + CSW01_18930 0.39 +0.3 908,620 + CSW01_18930 0.39 +0.0 908,630 + CSW01_18930 0.40 -3.3 908,703 - CSW01_18930 0.52 -0.3 908,729 + CSW01_18930 0.57 -0.2 908,737 - CSW01_18930 0.58 -1.3 908,737 - CSW01_18930 0.58 +1.0 908,758 - CSW01_18930 0.61 -2.7 908,802 + CSW01_18930 0.69 +0.5 908,810 - CSW01_18930 0.70 +0.6 908,810 - CSW01_18930 0.70 +0.8 908,906 + CSW01_18930 0.86 -1.4 908,924 - CSW01_18930 0.89 +0.7 909,076 + +0.2 909,082 + -1.7 909,090 - -0.7 909,193 + +1.1 909,198 + +0.6 909,201 - -1.0 909,201 - -1.5 909,201 - -0.5 909,214 - +0.5 909,216 + -3.0 909,307 + -0.8 909,412 - CSW01_18935 0.11 -0.1 909,423 + CSW01_18935 0.12 +0.3 909,431 - CSW01_18935 0.13 +0.8 909,448 + CSW01_18935 0.14 -0.2 909,522 - CSW01_18935 0.20 +0.2 909,552 - CSW01_18935 0.23 -0.6 909,552 - CSW01_18935 0.23 -1.8 909,552 - CSW01_18935 0.23 +0.3 909,632 + CSW01_18935 0.29 +0.1 909,648 + CSW01_18935 0.31 -3.3 909,653 + CSW01_18935 0.31 -0.6 909,658 + CSW01_18935 0.31 -0.2 909,661 - CSW01_18935 0.32 +1.3 909,712 + CSW01_18935 0.36 +0.6 909,712 + CSW01_18935 0.36 -0.1 909,793 + CSW01_18935 0.43 -1.7 909,801 - CSW01_18935 0.43 -0.3 909,801 - CSW01_18935 0.43 -1.5 909,871 + CSW01_18935 0.49 -0.4 909,879 - CSW01_18935 0.50 -1.4 909,887 - CSW01_18935 0.50 -2.7 909,910 - CSW01_18935 0.52 -0.1 909,992 - CSW01_18935 0.59 -0.0
Or see this region's nucleotide sequence