Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18830 and CSW01_18835 are separated by 151 nucleotides CSW01_18835 and CSW01_18840 are separated by 83 nucleotides CSW01_18840 and CSW01_18845 are separated by 322 nucleotides
CSW01_18830: CSW01_18830 - DeoR/GlpR family transcriptional regulator, at 889,558 to 890,319
_18830
CSW01_18835: CSW01_18835 - acyl-CoA thioesterase, at 890,471 to 890,959
_18835
CSW01_18840: CSW01_18840 - hypothetical protein, at 891,043 to 891,321
_18840
CSW01_18845: CSW01_18845 - maltose ABC transporter permease, at 891,644 to 892,534
_18845
Position (kb) 890
891 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 889.532 kb on - strand at 889.602 kb on + strand at 889.694 kb on - strand, within CSW01_18830 at 889.747 kb on - strand, within CSW01_18830 at 889.813 kb on + strand, within CSW01_18830 at 889.990 kb on - strand, within CSW01_18830 at 890.025 kb on - strand, within CSW01_18830 at 890.125 kb on - strand, within CSW01_18830 at 890.125 kb on - strand, within CSW01_18830 at 890.127 kb on - strand, within CSW01_18830 at 890.208 kb on + strand, within CSW01_18830 at 890.216 kb on - strand, within CSW01_18830 at 890.246 kb on + strand at 890.249 kb on - strand at 890.496 kb on - strand at 890.543 kb on + strand, within CSW01_18835 at 890.576 kb on - strand, within CSW01_18835 at 890.636 kb on + strand, within CSW01_18835 at 890.750 kb on + strand, within CSW01_18835 at 890.780 kb on + strand, within CSW01_18835 at 890.961 kb on + strand at 890.981 kb on - strand at 891.053 kb on + strand at 891.109 kb on + strand, within CSW01_18840 at 891.120 kb on + strand, within CSW01_18840 at 891.120 kb on + strand, within CSW01_18840 at 891.120 kb on + strand, within CSW01_18840 at 891.128 kb on - strand, within CSW01_18840 at 891.144 kb on + strand, within CSW01_18840 at 891.301 kb on + strand at 891.301 kb on + strand at 891.309 kb on - strand at 891.309 kb on - strand at 891.334 kb on + strand at 891.334 kb on + strand at 891.334 kb on + strand at 891.334 kb on + strand at 891.334 kb on + strand at 891.334 kb on + strand at 891.342 kb on - strand at 891.450 kb on + strand at 891.458 kb on - strand at 891.506 kb on + strand at 891.681 kb on + strand at 891.689 kb on - strand at 891.723 kb on + strand at 891.723 kb on + strand at 891.723 kb on + strand at 891.731 kb on - strand at 891.731 kb on - strand at 891.804 kb on - strand, within CSW01_18845 at 891.837 kb on - strand, within CSW01_18845 at 891.924 kb on - strand, within CSW01_18845 at 891.929 kb on - strand, within CSW01_18845 at 891.948 kb on - strand, within CSW01_18845 at 891.950 kb on + strand, within CSW01_18845 at 891.958 kb on - strand, within CSW01_18845
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 889,532 - -2.7 889,602 + +1.5 889,694 - CSW01_18830 0.18 +0.1 889,747 - CSW01_18830 0.25 -1.8 889,813 + CSW01_18830 0.33 -1.7 889,990 - CSW01_18830 0.57 +0.1 890,025 - CSW01_18830 0.61 +1.0 890,125 - CSW01_18830 0.74 +0.4 890,125 - CSW01_18830 0.74 -2.9 890,127 - CSW01_18830 0.75 -0.8 890,208 + CSW01_18830 0.85 -0.7 890,216 - CSW01_18830 0.86 -2.5 890,246 + +0.5 890,249 - +0.8 890,496 - +0.6 890,543 + CSW01_18835 0.15 -0.4 890,576 - CSW01_18835 0.21 -0.7 890,636 + CSW01_18835 0.34 -1.1 890,750 + CSW01_18835 0.57 -2.4 890,780 + CSW01_18835 0.63 -0.4 890,961 + -0.6 890,981 - -0.9 891,053 + -0.2 891,109 + CSW01_18840 0.24 +0.2 891,120 + CSW01_18840 0.28 -2.9 891,120 + CSW01_18840 0.28 +0.4 891,120 + CSW01_18840 0.28 +0.6 891,128 - CSW01_18840 0.30 +1.1 891,144 + CSW01_18840 0.36 -1.4 891,301 + -0.8 891,301 + -0.2 891,309 - -1.1 891,309 - -0.4 891,334 + -2.6 891,334 + +1.4 891,334 + +0.9 891,334 + +1.1 891,334 + +1.1 891,334 + +1.1 891,342 - +0.7 891,450 + +0.1 891,458 - +0.2 891,506 + +1.1 891,681 + -0.8 891,689 - -1.8 891,723 + +0.7 891,723 + -0.3 891,723 + +1.1 891,731 - -0.0 891,731 - +2.5 891,804 - CSW01_18845 0.18 -1.2 891,837 - CSW01_18845 0.22 -0.1 891,924 - CSW01_18845 0.31 +0.5 891,929 - CSW01_18845 0.32 +1.4 891,948 - CSW01_18845 0.34 +1.0 891,950 + CSW01_18845 0.34 -0.3 891,958 - CSW01_18845 0.35 -0.4
Or see this region's nucleotide sequence