Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18710

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18700 and CSW01_18705 overlap by 4 nucleotidesCSW01_18705 and CSW01_18710 are separated by 10 nucleotidesCSW01_18710 and CSW01_18715 are separated by 11 nucleotides CSW01_18700: CSW01_18700 - biopolymer transporter exbB1, at 864,626 to 865,312 _18700 CSW01_18705: CSW01_18705 - biopolymer transporter exbD1, at 865,309 to 865,725 _18705 CSW01_18710: CSW01_18710 - hemin ABC transporter substrate-binding protein, at 865,736 to 866,569 _18710 CSW01_18715: CSW01_18715 - iron ABC transporter permease, at 866,581 to 867,612 _18715 Position (kb) 865 866 867Strain fitness (log2 ratio) -4 -3 -2 -1 0 1at 864.741 kb on + strand, within CSW01_18700at 864.751 kb on + strand, within CSW01_18700at 864.843 kb on + strand, within CSW01_18700at 864.856 kb on - strand, within CSW01_18700at 864.861 kb on - strand, within CSW01_18700at 864.861 kb on - strand, within CSW01_18700at 864.983 kb on + strand, within CSW01_18700at 865.017 kb on - strand, within CSW01_18700at 865.022 kb on - strand, within CSW01_18700at 865.047 kb on - strand, within CSW01_18700at 865.068 kb on + strand, within CSW01_18700at 865.103 kb on - strand, within CSW01_18700at 865.116 kb on + strand, within CSW01_18700at 865.200 kb on + strand, within CSW01_18700at 865.212 kb on - strand, within CSW01_18700at 865.228 kb on + strand, within CSW01_18700at 865.229 kb on - strand, within CSW01_18700at 865.229 kb on - strand, within CSW01_18700at 865.242 kb on + strand, within CSW01_18700at 865.242 kb on + strand, within CSW01_18700at 865.248 kb on - strandat 865.356 kb on - strand, within CSW01_18705at 865.446 kb on + strand, within CSW01_18705at 865.536 kb on + strand, within CSW01_18705at 865.542 kb on + strand, within CSW01_18705at 865.550 kb on - strand, within CSW01_18705at 865.550 kb on - strand, within CSW01_18705at 865.550 kb on - strand, within CSW01_18705at 865.556 kb on + strand, within CSW01_18705at 865.564 kb on - strand, within CSW01_18705at 865.571 kb on - strand, within CSW01_18705at 865.706 kb on - strandat 865.854 kb on + strand, within CSW01_18710at 865.854 kb on + strand, within CSW01_18710at 865.970 kb on - strand, within CSW01_18710at 866.080 kb on - strand, within CSW01_18710at 866.164 kb on + strand, within CSW01_18710at 866.172 kb on - strand, within CSW01_18710at 866.172 kb on - strand, within CSW01_18710at 866.287 kb on + strand, within CSW01_18710at 866.340 kb on + strand, within CSW01_18710at 866.348 kb on - strand, within CSW01_18710at 866.375 kb on + strand, within CSW01_18710at 866.425 kb on + strand, within CSW01_18710at 866.425 kb on + strand, within CSW01_18710at 866.425 kb on + strand, within CSW01_18710at 866.433 kb on - strand, within CSW01_18710at 866.470 kb on - strand, within CSW01_18710at 866.555 kb on + strandat 866.555 kb on + strandat 866.565 kb on - strandat 866.725 kb on - strand, within CSW01_18715at 866.911 kb on + strand, within CSW01_18715at 866.919 kb on + strand, within CSW01_18715at 866.940 kb on + strand, within CSW01_18715at 866.943 kb on - strand, within CSW01_18715at 866.954 kb on + strand, within CSW01_18715at 867.060 kb on + strand, within CSW01_18715at 867.094 kb on + strand, within CSW01_18715at 867.102 kb on - strand, within CSW01_18715at 867.125 kb on + strand, within CSW01_18715at 867.125 kb on + strand, within CSW01_18715at 867.133 kb on - strand, within CSW01_18715at 867.140 kb on + strand, within CSW01_18715at 867.140 kb on + strand, within CSW01_18715at 867.140 kb on + strand, within CSW01_18715at 867.148 kb on - strand, within CSW01_18715at 867.148 kb on - strand, within CSW01_18715at 867.148 kb on - strand, within CSW01_18715at 867.148 kb on - strand, within CSW01_18715at 867.203 kb on + strand, within CSW01_18715at 867.211 kb on - strand, within CSW01_18715at 867.260 kb on + strand, within CSW01_18715at 867.453 kb on + strand, within CSW01_18715

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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864,741 + CSW01_18700 0.17 +0.3
864,751 + CSW01_18700 0.18 -1.3
864,843 + CSW01_18700 0.32 +1.4
864,856 - CSW01_18700 0.33 -0.4
864,861 - CSW01_18700 0.34 -1.4
864,861 - CSW01_18700 0.34 -1.1
864,983 + CSW01_18700 0.52 -0.8
865,017 - CSW01_18700 0.57 -0.7
865,022 - CSW01_18700 0.58 +0.1
865,047 - CSW01_18700 0.61 +0.5
865,068 + CSW01_18700 0.64 -1.0
865,103 - CSW01_18700 0.69 -0.8
865,116 + CSW01_18700 0.71 +0.9
865,200 + CSW01_18700 0.84 -0.7
865,212 - CSW01_18700 0.85 -4.2
865,228 + CSW01_18700 0.88 +0.2
865,229 - CSW01_18700 0.88 -0.1
865,229 - CSW01_18700 0.88 -0.1
865,242 + CSW01_18700 0.90 +0.3
865,242 + CSW01_18700 0.90 -2.6
865,248 - +0.2
865,356 - CSW01_18705 0.11 -0.8
865,446 + CSW01_18705 0.33 -2.5
865,536 + CSW01_18705 0.54 -0.4
865,542 + CSW01_18705 0.56 -1.9
865,550 - CSW01_18705 0.58 +0.1
865,550 - CSW01_18705 0.58 -3.7
865,550 - CSW01_18705 0.58 -1.4
865,556 + CSW01_18705 0.59 +0.2
865,564 - CSW01_18705 0.61 -0.2
865,571 - CSW01_18705 0.63 +0.1
865,706 - -0.6
865,854 + CSW01_18710 0.14 -2.0
865,854 + CSW01_18710 0.14 +1.1
865,970 - CSW01_18710 0.28 +1.3
866,080 - CSW01_18710 0.41 -2.3
866,164 + CSW01_18710 0.51 -1.6
866,172 - CSW01_18710 0.52 -0.1
866,172 - CSW01_18710 0.52 -1.2
866,287 + CSW01_18710 0.66 -1.4
866,340 + CSW01_18710 0.72 -1.5
866,348 - CSW01_18710 0.73 -0.1
866,375 + CSW01_18710 0.77 -0.5
866,425 + CSW01_18710 0.83 -1.5
866,425 + CSW01_18710 0.83 -0.9
866,425 + CSW01_18710 0.83 +0.1
866,433 - CSW01_18710 0.84 +0.2
866,470 - CSW01_18710 0.88 -0.6
866,555 + -0.1
866,555 + -0.6
866,565 - +1.2
866,725 - CSW01_18715 0.14 -0.2
866,911 + CSW01_18715 0.32 +0.8
866,919 + CSW01_18715 0.33 -2.5
866,940 + CSW01_18715 0.35 +0.6
866,943 - CSW01_18715 0.35 -2.2
866,954 + CSW01_18715 0.36 -2.1
867,060 + CSW01_18715 0.46 +0.5
867,094 + CSW01_18715 0.50 +0.6
867,102 - CSW01_18715 0.50 -1.5
867,125 + CSW01_18715 0.53 -3.3
867,125 + CSW01_18715 0.53 -1.8
867,133 - CSW01_18715 0.53 +1.0
867,140 + CSW01_18715 0.54 -2.0
867,140 + CSW01_18715 0.54 -0.3
867,140 + CSW01_18715 0.54 -1.0
867,148 - CSW01_18715 0.55 -0.2
867,148 - CSW01_18715 0.55 -2.8
867,148 - CSW01_18715 0.55 -0.3
867,148 - CSW01_18715 0.55 +1.6
867,203 + CSW01_18715 0.60 -1.3
867,211 - CSW01_18715 0.61 -2.6
867,260 + CSW01_18715 0.66 +1.4
867,453 + CSW01_18715 0.84 -2.7

Or see this region's nucleotide sequence