Experiment: ICP1_phage_2.3_MOI_rep1
Only strains with sufficient reads to estimate fitness are shown,
but the strain fitness values are still rather noisy and may be biased towards zero.
Strains near the edge of a gene are not shown as being associated with that
gene (they are in grey).
Strains in the central 10-90% of a gene are color coded by the insertion's strand.
Usually, "+" means that the selectable marker is encoded on the forward strand,
i.e., transcribed rightward.
500 nt CSW01_18545 and CSW01_18550 are separated by 50 nucleotides CSW01_18550 and CSW01_18555 are separated by 651 nucleotides CSW01_18555 and CSW01_18560 are separated by 177 nucleotides
CSW01_18545: CSW01_18545 - non-hemolytic enterotoxin lytic component L1, at 832,760 to 833,869
_18545
CSW01_18550: CSW01_18550 - non-hemolytic enterotoxin lytic component L1, at 833,920 to 834,981
_18550
CSW01_18555: CSW01_18555 - hypothetical protein, at 835,633 to 835,728
_18555
CSW01_18560: CSW01_18560 - hypothetical protein, at 835,906 to 836,097
_18560
Position (kb) 833
834
835 Strain fitness (log2 ratio) -3
-2
-1
0
1
2 at 832.980 kb on + strand, within CSW01_18545 at 833.110 kb on + strand, within CSW01_18545 at 833.110 kb on + strand, within CSW01_18545 at 833.118 kb on - strand, within CSW01_18545 at 833.118 kb on - strand, within CSW01_18545 at 833.169 kb on + strand, within CSW01_18545 at 833.207 kb on + strand, within CSW01_18545 at 833.207 kb on + strand, within CSW01_18545 at 833.333 kb on + strand, within CSW01_18545 at 833.421 kb on + strand, within CSW01_18545 at 833.429 kb on + strand, within CSW01_18545 at 833.521 kb on + strand, within CSW01_18545 at 833.577 kb on + strand, within CSW01_18545 at 833.579 kb on + strand, within CSW01_18545 at 833.599 kb on + strand, within CSW01_18545 at 833.669 kb on + strand, within CSW01_18545 at 833.669 kb on + strand, within CSW01_18545 at 833.669 kb on + strand, within CSW01_18545 at 833.704 kb on + strand, within CSW01_18545 at 833.712 kb on - strand, within CSW01_18545 at 833.728 kb on + strand, within CSW01_18545 at 833.730 kb on + strand, within CSW01_18545 at 833.847 kb on - strand at 833.862 kb on - strand at 833.864 kb on + strand at 833.872 kb on - strand at 833.872 kb on - strand at 833.903 kb on - strand at 833.983 kb on - strand at 834.010 kb on + strand at 834.043 kb on - strand, within CSW01_18550 at 834.048 kb on - strand, within CSW01_18550 at 834.050 kb on - strand, within CSW01_18550 at 834.050 kb on - strand, within CSW01_18550 at 834.104 kb on - strand, within CSW01_18550 at 834.201 kb on + strand, within CSW01_18550 at 834.209 kb on - strand, within CSW01_18550 at 834.237 kb on + strand, within CSW01_18550 at 834.238 kb on + strand, within CSW01_18550 at 834.254 kb on - strand, within CSW01_18550 at 834.306 kb on + strand, within CSW01_18550 at 834.360 kb on - strand, within CSW01_18550 at 834.374 kb on + strand, within CSW01_18550 at 834.456 kb on + strand, within CSW01_18550 at 834.556 kb on - strand, within CSW01_18550 at 834.589 kb on - strand, within CSW01_18550 at 834.601 kb on - strand, within CSW01_18550 at 834.726 kb on + strand, within CSW01_18550 at 834.784 kb on + strand, within CSW01_18550 at 834.862 kb on - strand, within CSW01_18550 at 834.924 kb on + strand at 834.939 kb on + strand at 834.942 kb on - strand at 835.012 kb on - strand at 835.059 kb on + strand at 835.071 kb on + strand at 835.085 kb on - strand at 835.086 kb on + strand at 835.130 kb on - strand at 835.141 kb on + strand at 835.176 kb on - strand at 835.191 kb on - strand at 835.276 kb on + strand at 835.281 kb on + strand at 835.284 kb on - strand at 835.306 kb on - strand at 835.306 kb on - strand at 835.413 kb on + strand at 835.413 kb on + strand at 835.418 kb on + strand at 835.435 kb on + strand at 835.452 kb on + strand at 835.508 kb on - strand at 835.608 kb on - strand at 835.693 kb on + strand, within CSW01_18555 at 835.694 kb on + strand, within CSW01_18555 at 835.694 kb on + strand, within CSW01_18555 at 835.701 kb on - strand, within CSW01_18555 at 835.818 kb on - strand at 835.913 kb on + strand
Per-strain Table
Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1 remove 832,980 + CSW01_18545 0.20 +0.2 833,110 + CSW01_18545 0.32 -0.0 833,110 + CSW01_18545 0.32 +0.4 833,118 - CSW01_18545 0.32 +1.4 833,118 - CSW01_18545 0.32 -0.4 833,169 + CSW01_18545 0.37 -0.4 833,207 + CSW01_18545 0.40 -1.1 833,207 + CSW01_18545 0.40 +0.1 833,333 + CSW01_18545 0.52 +1.5 833,421 + CSW01_18545 0.60 -0.6 833,429 + CSW01_18545 0.60 -2.8 833,521 + CSW01_18545 0.69 -1.8 833,577 + CSW01_18545 0.74 -1.0 833,579 + CSW01_18545 0.74 -0.5 833,599 + CSW01_18545 0.76 +0.1 833,669 + CSW01_18545 0.82 +1.4 833,669 + CSW01_18545 0.82 +0.2 833,669 + CSW01_18545 0.82 -1.6 833,704 + CSW01_18545 0.85 +1.8 833,712 - CSW01_18545 0.86 +1.2 833,728 + CSW01_18545 0.87 -0.2 833,730 + CSW01_18545 0.87 +0.5 833,847 - +0.9 833,862 - +1.6 833,864 + -0.5 833,872 - -0.6 833,872 - -0.1 833,903 - -2.5 833,983 - -3.0 834,010 + +1.1 834,043 - CSW01_18550 0.12 +0.9 834,048 - CSW01_18550 0.12 -1.0 834,050 - CSW01_18550 0.12 -2.1 834,050 - CSW01_18550 0.12 -1.0 834,104 - CSW01_18550 0.17 +2.1 834,201 + CSW01_18550 0.26 -0.7 834,209 - CSW01_18550 0.27 +0.1 834,237 + CSW01_18550 0.30 +1.0 834,238 + CSW01_18550 0.30 +0.3 834,254 - CSW01_18550 0.31 -0.3 834,306 + CSW01_18550 0.36 +0.4 834,360 - CSW01_18550 0.41 +1.5 834,374 + CSW01_18550 0.43 -0.9 834,456 + CSW01_18550 0.50 +2.4 834,556 - CSW01_18550 0.60 -3.4 834,589 - CSW01_18550 0.63 +0.3 834,601 - CSW01_18550 0.64 -2.3 834,726 + CSW01_18550 0.76 +0.5 834,784 + CSW01_18550 0.81 +0.2 834,862 - CSW01_18550 0.89 +0.3 834,924 + -2.2 834,939 + +0.5 834,942 - +0.9 835,012 - -0.6 835,059 + -1.5 835,071 + -1.8 835,085 - -1.6 835,086 + +1.3 835,130 - +0.3 835,141 + -0.3 835,176 - -1.4 835,191 - -0.6 835,276 + +0.9 835,281 + -0.4 835,284 - +2.7 835,306 - -0.5 835,306 - +0.1 835,413 + +0.4 835,413 + -1.4 835,418 + -1.0 835,435 + +0.5 835,452 + +0.3 835,508 - +2.4 835,608 - -0.8 835,693 + CSW01_18555 0.62 +0.6 835,694 + CSW01_18555 0.64 -0.4 835,694 + CSW01_18555 0.64 +0.9 835,701 - CSW01_18555 0.71 +1.0 835,818 - -1.1 835,913 + -0.5
Or see this region's nucleotide sequence