Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18445

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18440 and CSW01_18445 are separated by 15 nucleotidesCSW01_18445 and CSW01_18450 are separated by 477 nucleotides CSW01_18440: CSW01_18440 - long-chain fatty acid transporter, at 810,062 to 811,300 _18440 CSW01_18445: CSW01_18445 - lysophospholipase VolA, at 811,316 to 813,706 _18445 CSW01_18450: CSW01_18450 - hypothetical protein, at 814,184 to 815,464 _18450 Position (kb) 811 812 813 814Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 810.336 kb on - strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.448 kb on + strand, within CSW01_18440at 810.448 kb on + strand, within CSW01_18440at 810.460 kb on + strand, within CSW01_18440at 810.484 kb on - strand, within CSW01_18440at 810.495 kb on + strand, within CSW01_18440at 810.495 kb on + strand, within CSW01_18440at 810.505 kb on + strand, within CSW01_18440at 810.530 kb on + strand, within CSW01_18440at 810.533 kb on - strand, within CSW01_18440at 810.538 kb on - strand, within CSW01_18440at 810.586 kb on + strand, within CSW01_18440at 810.586 kb on + strand, within CSW01_18440at 810.601 kb on - strand, within CSW01_18440at 810.660 kb on + strand, within CSW01_18440at 810.720 kb on + strand, within CSW01_18440at 810.720 kb on + strand, within CSW01_18440at 810.777 kb on - strand, within CSW01_18440at 810.788 kb on + strand, within CSW01_18440at 810.825 kb on - strand, within CSW01_18440at 810.840 kb on + strand, within CSW01_18440at 810.884 kb on + strand, within CSW01_18440at 810.884 kb on + strand, within CSW01_18440at 810.884 kb on + strand, within CSW01_18440at 810.886 kb on + strand, within CSW01_18440at 810.894 kb on + strand, within CSW01_18440at 810.918 kb on + strand, within CSW01_18440at 810.918 kb on + strand, within CSW01_18440at 810.918 kb on + strand, within CSW01_18440at 810.926 kb on - strand, within CSW01_18440at 811.020 kb on + strand, within CSW01_18440at 811.020 kb on + strand, within CSW01_18440at 811.027 kb on + strand, within CSW01_18440at 811.028 kb on - strand, within CSW01_18440at 811.028 kb on - strand, within CSW01_18440at 811.030 kb on + strand, within CSW01_18440at 811.063 kb on - strand, within CSW01_18440at 811.096 kb on - strand, within CSW01_18440at 811.099 kb on - strand, within CSW01_18440at 811.138 kb on - strand, within CSW01_18440at 811.151 kb on - strand, within CSW01_18440at 811.184 kb on + strandat 811.192 kb on - strandat 811.199 kb on - strandat 811.240 kb on + strandat 811.267 kb on - strandat 811.267 kb on - strandat 811.267 kb on - strandat 811.342 kb on + strandat 811.347 kb on + strandat 811.350 kb on - strandat 811.359 kb on + strandat 811.401 kb on + strandat 811.409 kb on - strandat 811.436 kb on + strandat 811.525 kb on + strandat 811.595 kb on + strand, within CSW01_18445at 811.614 kb on - strand, within CSW01_18445at 811.682 kb on - strand, within CSW01_18445at 811.762 kb on + strand, within CSW01_18445at 811.765 kb on - strand, within CSW01_18445at 811.765 kb on - strand, within CSW01_18445at 811.770 kb on - strand, within CSW01_18445at 811.783 kb on + strand, within CSW01_18445at 811.805 kb on + strand, within CSW01_18445at 811.850 kb on - strand, within CSW01_18445at 812.054 kb on - strand, within CSW01_18445at 812.060 kb on + strand, within CSW01_18445at 812.135 kb on - strand, within CSW01_18445at 812.135 kb on - strand, within CSW01_18445at 812.149 kb on + strand, within CSW01_18445at 812.157 kb on - strand, within CSW01_18445at 812.158 kb on - strand, within CSW01_18445at 812.291 kb on + strand, within CSW01_18445at 812.339 kb on + strand, within CSW01_18445at 812.385 kb on - strand, within CSW01_18445at 812.385 kb on - strand, within CSW01_18445at 812.390 kb on + strand, within CSW01_18445at 812.471 kb on - strand, within CSW01_18445at 812.471 kb on - strand, within CSW01_18445at 812.471 kb on - strand, within CSW01_18445at 812.471 kb on - strand, within CSW01_18445at 812.482 kb on + strand, within CSW01_18445at 812.482 kb on + strand, within CSW01_18445at 812.482 kb on + strand, within CSW01_18445at 812.485 kb on - strand, within CSW01_18445at 812.490 kb on - strand, within CSW01_18445at 812.490 kb on - strand, within CSW01_18445at 812.490 kb on - strand, within CSW01_18445at 812.496 kb on + strand, within CSW01_18445at 812.525 kb on + strand, within CSW01_18445at 812.525 kb on + strand, within CSW01_18445at 812.533 kb on - strand, within CSW01_18445at 812.562 kb on - strand, within CSW01_18445at 812.562 kb on - strand, within CSW01_18445at 812.756 kb on + strand, within CSW01_18445at 812.756 kb on + strand, within CSW01_18445at 812.838 kb on - strand, within CSW01_18445at 812.877 kb on + strand, within CSW01_18445at 812.884 kb on - strand, within CSW01_18445at 812.884 kb on - strand, within CSW01_18445at 812.897 kb on + strand, within CSW01_18445at 812.915 kb on - strand, within CSW01_18445at 812.981 kb on + strand, within CSW01_18445at 813.015 kb on + strand, within CSW01_18445at 813.049 kb on - strand, within CSW01_18445at 813.049 kb on - strand, within CSW01_18445at 813.049 kb on - strand, within CSW01_18445at 813.051 kb on - strand, within CSW01_18445at 813.203 kb on - strand, within CSW01_18445at 813.300 kb on + strand, within CSW01_18445at 813.312 kb on + strand, within CSW01_18445at 813.320 kb on - strand, within CSW01_18445at 813.320 kb on - strand, within CSW01_18445at 813.332 kb on - strand, within CSW01_18445at 813.404 kb on + strand, within CSW01_18445at 813.447 kb on - strand, within CSW01_18445at 813.458 kb on - strand, within CSW01_18445at 813.473 kb on - strandat 813.520 kb on - strandat 813.540 kb on + strandat 813.550 kb on + strandat 813.558 kb on - strandat 813.754 kb on - strandat 813.773 kb on - strandat 813.798 kb on + strandat 813.806 kb on - strandat 813.806 kb on - strandat 813.928 kb on - strandat 813.991 kb on + strandat 814.025 kb on + strandat 814.030 kb on + strandat 814.146 kb on + strandat 814.213 kb on + strandat 814.231 kb on + strandat 814.239 kb on - strandat 814.246 kb on + strandat 814.254 kb on - strandat 814.254 kb on - strandat 814.254 kb on - strandat 814.268 kb on - strandat 814.346 kb on - strand, within CSW01_18450at 814.388 kb on - strand, within CSW01_18450at 814.398 kb on - strand, within CSW01_18450at 814.398 kb on - strand, within CSW01_18450at 814.425 kb on + strand, within CSW01_18450at 814.492 kb on - strand, within CSW01_18450at 814.688 kb on + strand, within CSW01_18450

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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810,336 - CSW01_18440 0.22 -0.1
810,409 + CSW01_18440 0.28 -0.1
810,409 + CSW01_18440 0.28 +0.2
810,409 + CSW01_18440 0.28 +1.4
810,448 + CSW01_18440 0.31 -1.7
810,448 + CSW01_18440 0.31 -1.7
810,460 + CSW01_18440 0.32 -0.9
810,484 - CSW01_18440 0.34 -0.6
810,495 + CSW01_18440 0.35 -0.4
810,495 + CSW01_18440 0.35 +1.0
810,505 + CSW01_18440 0.36 -2.3
810,530 + CSW01_18440 0.38 -0.0
810,533 - CSW01_18440 0.38 +0.3
810,538 - CSW01_18440 0.38 +0.6
810,586 + CSW01_18440 0.42 +0.6
810,586 + CSW01_18440 0.42 -1.1
810,601 - CSW01_18440 0.44 -2.8
810,660 + CSW01_18440 0.48 +1.9
810,720 + CSW01_18440 0.53 +1.9
810,720 + CSW01_18440 0.53 -1.0
810,777 - CSW01_18440 0.58 +0.7
810,788 + CSW01_18440 0.59 +1.0
810,825 - CSW01_18440 0.62 +1.4
810,840 + CSW01_18440 0.63 +0.2
810,884 + CSW01_18440 0.66 +0.3
810,884 + CSW01_18440 0.66 -3.2
810,884 + CSW01_18440 0.66 +1.8
810,886 + CSW01_18440 0.67 -2.4
810,894 + CSW01_18440 0.67 -0.3
810,918 + CSW01_18440 0.69 -0.5
810,918 + CSW01_18440 0.69 -2.3
810,918 + CSW01_18440 0.69 +1.0
810,926 - CSW01_18440 0.70 -2.1
811,020 + CSW01_18440 0.77 +1.3
811,020 + CSW01_18440 0.77 +0.4
811,027 + CSW01_18440 0.78 -1.1
811,028 - CSW01_18440 0.78 -2.3
811,028 - CSW01_18440 0.78 +0.9
811,030 + CSW01_18440 0.78 +0.8
811,063 - CSW01_18440 0.81 +0.6
811,096 - CSW01_18440 0.83 +0.5
811,099 - CSW01_18440 0.84 -1.3
811,138 - CSW01_18440 0.87 +0.4
811,151 - CSW01_18440 0.88 -0.6
811,184 + -0.8
811,192 - -1.6
811,199 - -0.9
811,240 + +0.5
811,267 - -0.2
811,267 - -0.7
811,267 - +0.6
811,342 + -1.3
811,347 + +1.7
811,350 - -3.2
811,359 + -0.7
811,401 + -2.0
811,409 - -0.5
811,436 + +0.6
811,525 + +1.7
811,595 + CSW01_18445 0.12 -0.6
811,614 - CSW01_18445 0.12 -0.7
811,682 - CSW01_18445 0.15 +0.1
811,762 + CSW01_18445 0.19 +0.3
811,765 - CSW01_18445 0.19 -2.3
811,765 - CSW01_18445 0.19 -0.5
811,770 - CSW01_18445 0.19 +0.0
811,783 + CSW01_18445 0.20 -0.7
811,805 + CSW01_18445 0.20 +2.0
811,850 - CSW01_18445 0.22 -1.2
812,054 - CSW01_18445 0.31 +0.4
812,060 + CSW01_18445 0.31 +1.1
812,135 - CSW01_18445 0.34 -0.8
812,135 - CSW01_18445 0.34 -0.0
812,149 + CSW01_18445 0.35 -2.6
812,157 - CSW01_18445 0.35 -2.6
812,158 - CSW01_18445 0.35 -1.0
812,291 + CSW01_18445 0.41 +0.6
812,339 + CSW01_18445 0.43 -0.1
812,385 - CSW01_18445 0.45 -2.3
812,385 - CSW01_18445 0.45 +1.4
812,390 + CSW01_18445 0.45 +0.0
812,471 - CSW01_18445 0.48 -0.3
812,471 - CSW01_18445 0.48 -2.1
812,471 - CSW01_18445 0.48 +0.4
812,471 - CSW01_18445 0.48 -2.5
812,482 + CSW01_18445 0.49 -1.3
812,482 + CSW01_18445 0.49 -1.2
812,482 + CSW01_18445 0.49 -1.3
812,485 - CSW01_18445 0.49 -0.6
812,490 - CSW01_18445 0.49 +0.8
812,490 - CSW01_18445 0.49 -0.8
812,490 - CSW01_18445 0.49 -2.8
812,496 + CSW01_18445 0.49 -1.6
812,525 + CSW01_18445 0.51 +0.1
812,525 + CSW01_18445 0.51 +1.3
812,533 - CSW01_18445 0.51 +0.5
812,562 - CSW01_18445 0.52 +3.3
812,562 - CSW01_18445 0.52 -0.3
812,756 + CSW01_18445 0.60 -1.5
812,756 + CSW01_18445 0.60 -3.4
812,838 - CSW01_18445 0.64 +0.1
812,877 + CSW01_18445 0.65 -2.3
812,884 - CSW01_18445 0.66 +0.9
812,884 - CSW01_18445 0.66 +1.0
812,897 + CSW01_18445 0.66 +0.6
812,915 - CSW01_18445 0.67 -0.2
812,981 + CSW01_18445 0.70 -0.5
813,015 + CSW01_18445 0.71 +0.8
813,049 - CSW01_18445 0.72 -1.3
813,049 - CSW01_18445 0.72 -1.3
813,049 - CSW01_18445 0.72 -0.9
813,051 - CSW01_18445 0.73 +0.3
813,203 - CSW01_18445 0.79 -2.3
813,300 + CSW01_18445 0.83 -1.5
813,312 + CSW01_18445 0.83 -2.0
813,320 - CSW01_18445 0.84 -0.8
813,320 - CSW01_18445 0.84 -4.0
813,332 - CSW01_18445 0.84 -0.8
813,404 + CSW01_18445 0.87 +0.7
813,447 - CSW01_18445 0.89 +1.7
813,458 - CSW01_18445 0.90 +1.4
813,473 - -1.2
813,520 - -3.5
813,540 + -0.4
813,550 + +1.2
813,558 - -2.7
813,754 - -0.2
813,773 - -1.7
813,798 + -2.2
813,806 - +0.1
813,806 - +0.1
813,928 - -0.0
813,991 + +0.2
814,025 + +0.6
814,030 + +0.7
814,146 + +1.7
814,213 + +1.2
814,231 + -0.5
814,239 - +0.2
814,246 + -0.4
814,254 - +1.1
814,254 - +0.7
814,254 - +0.7
814,268 - +0.3
814,346 - CSW01_18450 0.13 -2.3
814,388 - CSW01_18450 0.16 +2.2
814,398 - CSW01_18450 0.17 -2.3
814,398 - CSW01_18450 0.17 +0.5
814,425 + CSW01_18450 0.19 -0.5
814,492 - CSW01_18450 0.24 +0.3
814,688 + CSW01_18450 0.39 -0.3

Or see this region's nucleotide sequence