Strain Fitness in Vibrio cholerae E7946 ATCC 55056 around CSW01_18430

Experiment: ICP1_phage_2.3_MOI_rep1

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Only strains with sufficient reads to estimate fitness are shown, but the strain fitness values are still rather noisy and may be biased towards zero. Strains near the edge of a gene are not shown as being associated with that gene (they are in grey). Strains in the central 10-90% of a gene are color coded by the insertion's strand. Usually, "+" means that the selectable marker is encoded on the forward strand, i.e., transcribed rightward.

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500 ntCSW01_18425 and CSW01_18430 are separated by 291 nucleotidesCSW01_18430 and CSW01_18435 overlap by 11 nucleotidesCSW01_18435 and CSW01_18440 are separated by 359 nucleotides CSW01_18425: CSW01_18425 - oxidoreductase, at 806,240 to 807,163 _18425 CSW01_18430: CSW01_18430 - alpha-amylase, at 807,455 to 809,527 _18430 CSW01_18435: CSW01_18435 - hypothetical protein, at 809,517 to 809,702 _18435 CSW01_18440: CSW01_18440 - long-chain fatty acid transporter, at 810,062 to 811,300 _18440 Position (kb) 807 808 809 810Strain fitness (log2 ratio) -4 -3 -2 -1 0 1 2 3at 806.509 kb on + strand, within CSW01_18425at 806.602 kb on - strand, within CSW01_18425at 806.608 kb on - strand, within CSW01_18425at 806.618 kb on - strand, within CSW01_18425at 806.626 kb on - strand, within CSW01_18425at 806.653 kb on + strand, within CSW01_18425at 806.658 kb on + strand, within CSW01_18425at 806.658 kb on + strand, within CSW01_18425at 806.697 kb on + strand, within CSW01_18425at 806.705 kb on - strand, within CSW01_18425at 806.803 kb on + strand, within CSW01_18425at 806.887 kb on + strand, within CSW01_18425at 806.895 kb on - strand, within CSW01_18425at 806.929 kb on + strand, within CSW01_18425at 806.950 kb on - strand, within CSW01_18425at 806.970 kb on - strand, within CSW01_18425at 807.006 kb on + strand, within CSW01_18425at 807.027 kb on - strand, within CSW01_18425at 807.049 kb on - strand, within CSW01_18425at 807.052 kb on + strand, within CSW01_18425at 807.090 kb on + strandat 807.099 kb on + strandat 807.109 kb on + strandat 807.117 kb on - strandat 807.117 kb on - strandat 807.117 kb on - strandat 807.117 kb on - strandat 807.205 kb on + strandat 807.324 kb on - strandat 807.366 kb on + strandat 807.467 kb on + strandat 807.467 kb on + strandat 807.484 kb on + strandat 807.491 kb on + strandat 807.491 kb on + strandat 807.492 kb on - strandat 807.520 kb on + strandat 807.703 kb on + strand, within CSW01_18430at 807.713 kb on + strand, within CSW01_18430at 807.773 kb on + strand, within CSW01_18430at 807.781 kb on - strand, within CSW01_18430at 807.785 kb on + strand, within CSW01_18430at 807.786 kb on - strand, within CSW01_18430at 807.807 kb on + strand, within CSW01_18430at 807.807 kb on + strand, within CSW01_18430at 807.808 kb on + strand, within CSW01_18430at 807.815 kb on - strand, within CSW01_18430at 807.873 kb on - strand, within CSW01_18430at 807.873 kb on - strand, within CSW01_18430at 807.947 kb on + strand, within CSW01_18430at 807.967 kb on - strand, within CSW01_18430at 807.975 kb on + strand, within CSW01_18430at 808.002 kb on + strand, within CSW01_18430at 808.019 kb on + strand, within CSW01_18430at 808.059 kb on - strand, within CSW01_18430at 808.137 kb on - strand, within CSW01_18430at 808.160 kb on - strand, within CSW01_18430at 808.186 kb on + strand, within CSW01_18430at 808.397 kb on - strand, within CSW01_18430at 808.506 kb on + strand, within CSW01_18430at 808.506 kb on + strand, within CSW01_18430at 808.506 kb on + strand, within CSW01_18430at 808.506 kb on + strand, within CSW01_18430at 808.506 kb on + strand, within CSW01_18430at 808.506 kb on + strand, within CSW01_18430at 808.514 kb on - strand, within CSW01_18430at 808.514 kb on - strand, within CSW01_18430at 808.516 kb on - strand, within CSW01_18430at 808.571 kb on + strand, within CSW01_18430at 808.616 kb on + strand, within CSW01_18430at 808.617 kb on + strand, within CSW01_18430at 808.622 kb on + strand, within CSW01_18430at 808.624 kb on - strand, within CSW01_18430at 808.658 kb on - strand, within CSW01_18430at 808.658 kb on - strand, within CSW01_18430at 808.660 kb on + strand, within CSW01_18430at 808.712 kb on + strand, within CSW01_18430at 808.733 kb on - strand, within CSW01_18430at 808.791 kb on - strand, within CSW01_18430at 808.791 kb on - strand, within CSW01_18430at 808.791 kb on - strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.899 kb on + strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.907 kb on - strand, within CSW01_18430at 808.916 kb on + strand, within CSW01_18430at 808.923 kb on + strand, within CSW01_18430at 808.931 kb on - strand, within CSW01_18430at 808.966 kb on - strand, within CSW01_18430at 809.024 kb on - strand, within CSW01_18430at 809.024 kb on - strand, within CSW01_18430at 809.093 kb on - strand, within CSW01_18430at 809.146 kb on + strand, within CSW01_18430at 809.167 kb on - strand, within CSW01_18430at 809.178 kb on + strand, within CSW01_18430at 809.208 kb on - strand, within CSW01_18430at 809.232 kb on + strand, within CSW01_18430at 809.242 kb on + strand, within CSW01_18430at 809.250 kb on - strand, within CSW01_18430at 809.267 kb on + strand, within CSW01_18430at 809.295 kb on + strand, within CSW01_18430at 809.339 kb on + strandat 809.347 kb on - strandat 809.347 kb on - strandat 809.367 kb on + strandat 809.383 kb on - strandat 809.394 kb on + strandat 809.430 kb on + strandat 809.433 kb on + strandat 809.441 kb on - strandat 809.548 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.601 kb on - strand, within CSW01_18435at 809.815 kb on + strandat 809.844 kb on - strandat 809.909 kb on - strandat 809.947 kb on + strandat 809.969 kb on - strandat 809.969 kb on - strandat 810.067 kb on + strandat 810.093 kb on + strandat 810.093 kb on + strandat 810.115 kb on + strandat 810.123 kb on - strandat 810.158 kb on + strandat 810.158 kb on + strandat 810.158 kb on + strandat 810.158 kb on + strandat 810.166 kb on - strandat 810.166 kb on - strandat 810.166 kb on - strandat 810.259 kb on - strand, within CSW01_18440at 810.336 kb on - strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.409 kb on + strand, within CSW01_18440at 810.448 kb on + strand, within CSW01_18440at 810.448 kb on + strand, within CSW01_18440at 810.460 kb on + strand, within CSW01_18440at 810.484 kb on - strand, within CSW01_18440at 810.495 kb on + strand, within CSW01_18440at 810.495 kb on + strand, within CSW01_18440at 810.505 kb on + strand, within CSW01_18440

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Per-strain Table

Position Strand Gene LocusTag Fraction ICP1_phage_2.3_MOI_rep1
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806,509 + CSW01_18425 0.29 -0.5
806,602 - CSW01_18425 0.39 +0.6
806,608 - CSW01_18425 0.40 -2.1
806,618 - CSW01_18425 0.41 +0.4
806,626 - CSW01_18425 0.42 -1.1
806,653 + CSW01_18425 0.45 +1.5
806,658 + CSW01_18425 0.45 -2.8
806,658 + CSW01_18425 0.45 +0.4
806,697 + CSW01_18425 0.49 +0.0
806,705 - CSW01_18425 0.50 +0.6
806,803 + CSW01_18425 0.61 -3.9
806,887 + CSW01_18425 0.70 +1.2
806,895 - CSW01_18425 0.71 +0.7
806,929 + CSW01_18425 0.75 +0.2
806,950 - CSW01_18425 0.77 +0.9
806,970 - CSW01_18425 0.79 +1.0
807,006 + CSW01_18425 0.83 -3.6
807,027 - CSW01_18425 0.85 -1.6
807,049 - CSW01_18425 0.88 -0.0
807,052 + CSW01_18425 0.88 -0.6
807,090 + -1.6
807,099 + -1.9
807,109 + +0.9
807,117 - +0.5
807,117 - -0.1
807,117 - -2.5
807,117 - +0.4
807,205 + +0.5
807,324 - +1.2
807,366 + +0.8
807,467 + +0.1
807,467 + -1.0
807,484 + -0.3
807,491 + -1.3
807,491 + -0.3
807,492 - -0.3
807,520 + -2.5
807,703 + CSW01_18430 0.12 +0.4
807,713 + CSW01_18430 0.12 -3.8
807,773 + CSW01_18430 0.15 -1.2
807,781 - CSW01_18430 0.16 +0.4
807,785 + CSW01_18430 0.16 -0.4
807,786 - CSW01_18430 0.16 +1.0
807,807 + CSW01_18430 0.17 -0.1
807,807 + CSW01_18430 0.17 -3.5
807,808 + CSW01_18430 0.17 -1.2
807,815 - CSW01_18430 0.17 -0.4
807,873 - CSW01_18430 0.20 +1.5
807,873 - CSW01_18430 0.20 -2.0
807,947 + CSW01_18430 0.24 -1.5
807,967 - CSW01_18430 0.25 -0.8
807,975 + CSW01_18430 0.25 +0.4
808,002 + CSW01_18430 0.26 -3.2
808,019 + CSW01_18430 0.27 -0.9
808,059 - CSW01_18430 0.29 +1.1
808,137 - CSW01_18430 0.33 +1.4
808,160 - CSW01_18430 0.34 +0.6
808,186 + CSW01_18430 0.35 -2.1
808,397 - CSW01_18430 0.45 -1.8
808,506 + CSW01_18430 0.51 +0.0
808,506 + CSW01_18430 0.51 +0.5
808,506 + CSW01_18430 0.51 +1.3
808,506 + CSW01_18430 0.51 -0.6
808,506 + CSW01_18430 0.51 -3.2
808,506 + CSW01_18430 0.51 -1.4
808,514 - CSW01_18430 0.51 -2.0
808,514 - CSW01_18430 0.51 -3.0
808,516 - CSW01_18430 0.51 -0.2
808,571 + CSW01_18430 0.54 -1.5
808,616 + CSW01_18430 0.56 -0.1
808,617 + CSW01_18430 0.56 +3.6
808,622 + CSW01_18430 0.56 -2.4
808,624 - CSW01_18430 0.56 +0.1
808,658 - CSW01_18430 0.58 +1.6
808,658 - CSW01_18430 0.58 +0.3
808,660 + CSW01_18430 0.58 +0.9
808,712 + CSW01_18430 0.61 -0.5
808,733 - CSW01_18430 0.62 -1.1
808,791 - CSW01_18430 0.64 +0.0
808,791 - CSW01_18430 0.64 -1.7
808,791 - CSW01_18430 0.64 +0.6
808,899 + CSW01_18430 0.70 -0.3
808,899 + CSW01_18430 0.70 -2.2
808,899 + CSW01_18430 0.70 -0.6
808,899 + CSW01_18430 0.70 -0.1
808,899 + CSW01_18430 0.70 -0.4
808,899 + CSW01_18430 0.70 +0.6
808,907 - CSW01_18430 0.70 -1.0
808,907 - CSW01_18430 0.70 -0.3
808,907 - CSW01_18430 0.70 +0.2
808,907 - CSW01_18430 0.70 -1.1
808,907 - CSW01_18430 0.70 -2.0
808,907 - CSW01_18430 0.70 +0.1
808,907 - CSW01_18430 0.70 -1.8
808,916 + CSW01_18430 0.70 -1.6
808,923 + CSW01_18430 0.71 -1.2
808,931 - CSW01_18430 0.71 -0.6
808,966 - CSW01_18430 0.73 -1.7
809,024 - CSW01_18430 0.76 -0.8
809,024 - CSW01_18430 0.76 -1.5
809,093 - CSW01_18430 0.79 -0.2
809,146 + CSW01_18430 0.82 -1.6
809,167 - CSW01_18430 0.83 +2.2
809,178 + CSW01_18430 0.83 -1.6
809,208 - CSW01_18430 0.85 -0.8
809,232 + CSW01_18430 0.86 +1.0
809,242 + CSW01_18430 0.86 +1.3
809,250 - CSW01_18430 0.87 +1.3
809,267 + CSW01_18430 0.87 -2.3
809,295 + CSW01_18430 0.89 -3.1
809,339 + +0.2
809,347 - -0.5
809,347 - -0.1
809,367 + +0.7
809,383 - -0.2
809,394 + +0.1
809,430 + -3.0
809,433 + -2.0
809,441 - -2.6
809,548 - CSW01_18435 0.17 +1.0
809,601 - CSW01_18435 0.45 -2.0
809,601 - CSW01_18435 0.45 -0.9
809,601 - CSW01_18435 0.45 -1.6
809,601 - CSW01_18435 0.45 -0.5
809,815 + -1.4
809,844 - -1.6
809,909 - -0.3
809,947 + -0.7
809,969 - -2.4
809,969 - -0.7
810,067 + -1.3
810,093 + +0.6
810,093 + -1.4
810,115 + +1.7
810,123 - +0.4
810,158 + -1.8
810,158 + -0.8
810,158 + -1.2
810,158 + +1.2
810,166 - +0.2
810,166 - +0.7
810,166 - +0.8
810,259 - CSW01_18440 0.16 +0.7
810,336 - CSW01_18440 0.22 -0.1
810,409 + CSW01_18440 0.28 -0.1
810,409 + CSW01_18440 0.28 +0.2
810,409 + CSW01_18440 0.28 +1.4
810,448 + CSW01_18440 0.31 -1.7
810,448 + CSW01_18440 0.31 -1.7
810,460 + CSW01_18440 0.32 -0.9
810,484 - CSW01_18440 0.34 -0.6
810,495 + CSW01_18440 0.35 -0.4
810,495 + CSW01_18440 0.35 +1.0
810,505 + CSW01_18440 0.36 -2.3

Or see this region's nucleotide sequence